Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.13■□□□□ 0.33
PDX1P52945 AC007967.3-201ENST00000434308 558 ntBASIC17.13■□□□□ 0.33
PDX1P52945 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
PDX1P52945 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.13■□□□□ 0.33
PDX1P52945 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PDX1P52945 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.13■□□□□ 0.33
PDX1P52945 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.13■□□□□ 0.33
PDX1P52945 MTDHP4-201ENST00000600287 670 ntBASIC17.13■□□□□ 0.33
PDX1P52945 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
PDX1P52945 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PDX1P52945 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PDX1P52945 AC055717.3-201ENST00000622967 595 ntBASIC17.13■□□□□ 0.33
PDX1P52945 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.13■□□□□ 0.33
PDX1P52945 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PDX1P52945 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PDX1P52945 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
PDX1P52945 NOC2LP1-202ENST00000452600 2235 ntBASIC17.13■□□□□ 0.33
PDX1P52945 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PDX1P52945 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
PDX1P52945 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
PDX1P52945 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
PDX1P52945 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.13■□□□□ 0.33
PDX1P52945 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
PDX1P52945 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PDX1P52945 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
PDX1P52945 AP002414.3-201ENST00000589352 1468 ntBASIC17.12■□□□□ 0.33
PDX1P52945 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PDX1P52945 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PDX1P52945 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PDX1P52945 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.12■□□□□ 0.33
PDX1P52945 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PDX1P52945 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PDX1P52945 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.12■□□□□ 0.33
PDX1P52945 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PDX1P52945 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.12■□□□□ 0.33
PDX1P52945 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.12■□□□□ 0.33
PDX1P52945 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PDX1P52945 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PDX1P52945 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.12■□□□□ 0.33
PDX1P52945 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.12■□□□□ 0.33
PDX1P52945 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.12■□□□□ 0.33
PDX1P52945 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.12■□□□□ 0.33
PDX1P52945 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PDX1P52945 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PDX1P52945 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PDX1P52945 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.12■□□□□ 0.33
PDX1P52945 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PDX1P52945 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.12■□□□□ 0.33
PDX1P52945 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PDX1P52945 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
PDX1P52945 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.12■□□□□ 0.33
PDX1P52945 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
PDX1P52945 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.12■□□□□ 0.33
PDX1P52945 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.12■□□□□ 0.33
PDX1P52945 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PDX1P52945 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PDX1P52945 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PDX1P52945 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.11■□□□□ 0.33
PDX1P52945 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PDX1P52945 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.11■□□□□ 0.33
PDX1P52945 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PDX1P52945 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDX1P52945 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDX1P52945 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDX1P52945 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
PDX1P52945 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PDX1P52945 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDX1P52945 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
PDX1P52945 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.11■□□□□ 0.33
PDX1P52945 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PDX1P52945 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PDX1P52945 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDX1P52945 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDX1P52945 AL591424.1-201ENST00000442569 1213 ntBASIC17.11■□□□□ 0.33
PDX1P52945 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.11■□□□□ 0.33
PDX1P52945 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.11■□□□□ 0.33
PDX1P52945 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.11■□□□□ 0.33
PDX1P52945 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PDX1P52945 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
PDX1P52945 AC093677.2-201ENST00000600169 1863 ntBASIC17.11■□□□□ 0.33
PDX1P52945 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDX1P52945 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PDX1P52945 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PDX1P52945 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PDX1P52945 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDX1P52945 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDX1P52945 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.11■□□□□ 0.33
PDX1P52945 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PDX1P52945 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
PDX1P52945 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.1■□□□□ 0.33
PDX1P52945 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.1■□□□□ 0.33
PDX1P52945 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDX1P52945 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PDX1P52945 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
PDX1P52945 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PDX1P52945 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PDX1P52945 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDX1P52945 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.1■□□□□ 0.33
PDX1P52945 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDX1P52945 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms