Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
RFX3P48380 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFX3P48380 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFX3P48380 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFX3P48380 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
RFX3P48380 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFX3P48380 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RFX3P48380 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.62■□□□□ 0.25
RFX3P48380 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX3P48380 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RFX3P48380 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.61■□□□□ 0.25
RFX3P48380 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RFX3P48380 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX3P48380 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RFX3P48380 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RFX3P48380 AC139713.2-201ENST00000641328 2723 ntBASIC16.61■□□□□ 0.25
RFX3P48380 ARMC10P1-201ENST00000313754 855 ntBASIC16.61■□□□□ 0.25
RFX3P48380 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX3P48380 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.61■□□□□ 0.25
RFX3P48380 TSPY22P-201ENST00000427496 604 ntBASIC16.61■□□□□ 0.25
RFX3P48380 KRT18P35-201ENST00000510488 1269 ntBASIC16.61■□□□□ 0.25
RFX3P48380 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
RFX3P48380 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.61■□□□□ 0.25
RFX3P48380 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.61■□□□□ 0.25
RFX3P48380 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.61■□□□□ 0.25
RFX3P48380 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RFX3P48380 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
RFX3P48380 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RFX3P48380 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX3P48380 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.61■□□□□ 0.25
RFX3P48380 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX3P48380 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RFX3P48380 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RFX3P48380 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX3P48380 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
RFX3P48380 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX3P48380 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX3P48380 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RFX3P48380 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX3P48380 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX3P48380 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
RFX3P48380 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
RFX3P48380 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX3P48380 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX3P48380 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
RFX3P48380 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RFX3P48380 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX3P48380 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.6■□□□□ 0.25
RFX3P48380 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX3P48380 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.6■□□□□ 0.25
RFX3P48380 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX3P48380 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
RFX3P48380 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
RFX3P48380 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
RFX3P48380 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.6■□□□□ 0.25
RFX3P48380 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.6■□□□□ 0.25
RFX3P48380 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX3P48380 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
RFX3P48380 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.6■□□□□ 0.25
RFX3P48380 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.6■□□□□ 0.25
RFX3P48380 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.6■□□□□ 0.25
RFX3P48380 KRT18P65-201ENST00000439811 1286 ntBASIC16.6■□□□□ 0.25
RFX3P48380 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.6■□□□□ 0.25
RFX3P48380 AL390719.2-201ENST00000606993 987 ntBASIC16.6■□□□□ 0.25
RFX3P48380 AL121956.5-201ENST00000625261 221 ntBASIC16.6■□□□□ 0.25
RFX3P48380 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RFX3P48380 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RFX3P48380 GNAS-203ENST00000306120 1878 ntBASIC16.6■□□□□ 0.25
RFX3P48380 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
RFX3P48380 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.6■□□□□ 0.25
RFX3P48380 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX3P48380 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX3P48380 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.6■□□□□ 0.25
RFX3P48380 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX3P48380 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX3P48380 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.6■□□□□ 0.25
RFX3P48380 KRT18P55-202ENST00000578578 1546 ntBASIC16.6■□□□□ 0.25
RFX3P48380 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX3P48380 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RFX3P48380 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.59■□□□□ 0.25
RFX3P48380 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
RFX3P48380 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RFX3P48380 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFX3P48380 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFX3P48380 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFX3P48380 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RFX3P48380 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.59■□□□□ 0.25
RFX3P48380 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
RFX3P48380 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
RFX3P48380 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFX3P48380 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFX3P48380 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RFX3P48380 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RFX3P48380 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.59■□□□□ 0.25
RFX3P48380 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
RFX3P48380 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.59■□□□□ 0.25
RFX3P48380 DUTP2-201ENST00000519164 463 ntBASIC16.59■□□□□ 0.25
RFX3P48380 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.59■□□□□ 0.25
RFX3P48380 AL136038.3-201ENST00000561909 1096 ntBASIC16.59■□□□□ 0.25
RFX3P48380 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms