Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
BRCA1P38398 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC21.24■□□□□ 0.99
BRCA1P38398 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC21.24■□□□□ 0.99
BRCA1P38398 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC21.24■□□□□ 0.99
BRCA1P38398 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC21.24■□□□□ 0.99
BRCA1P38398 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC21.24■□□□□ 0.99
BRCA1P38398 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC21.24■□□□□ 0.99
BRCA1P38398 AL132655.2-201ENST00000596276 594 ntBASIC21.24■□□□□ 0.99
BRCA1P38398 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
BRCA1P38398 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
BRCA1P38398 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
BRCA1P38398 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
BRCA1P38398 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
BRCA1P38398 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
BRCA1P38398 PIN1P1-201ENST00000412108 996 ntBASIC21.24■□□□□ 0.99
BRCA1P38398 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
BRCA1P38398 SPCS2P4-201ENST00000436160 681 ntBASIC21.24■□□□□ 0.99
BRCA1P38398 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC21.24■□□□□ 0.99
BRCA1P38398 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRCA1P38398 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRCA1P38398 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRCA1P38398 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC21.23■□□□□ 0.99
BRCA1P38398 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
BRCA1P38398 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC21.23■□□□□ 0.99
BRCA1P38398 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC21.23■□□□□ 0.99
BRCA1P38398 AC079776.1-201ENST00000401540 1152 ntBASIC21.23■□□□□ 0.99
BRCA1P38398 NME2P1-201ENST00000426182 414 ntBASIC21.23■□□□□ 0.99
BRCA1P38398 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRCA1P38398 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC21.23■□□□□ 0.99
BRCA1P38398 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRCA1P38398 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRCA1P38398 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
BRCA1P38398 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.23■□□□□ 0.99
BRCA1P38398 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRCA1P38398 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.23■□□□□ 0.99
BRCA1P38398 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC21.23■□□□□ 0.99
BRCA1P38398 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRCA1P38398 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC21.23■□□□□ 0.99
BRCA1P38398 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRCA1P38398 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRCA1P38398 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC21.23■□□□□ 0.99
BRCA1P38398 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRCA1P38398 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
BRCA1P38398 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRCA1P38398 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
BRCA1P38398 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
BRCA1P38398 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC21.22■□□□□ 0.99
BRCA1P38398 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC21.22■□□□□ 0.99
BRCA1P38398 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC21.22■□□□□ 0.99
BRCA1P38398 HILS1-202ENST00000545329 423 ntBASIC21.22■□□□□ 0.99
BRCA1P38398 CD7-202ENST00000578509 925 ntTSL 3 BASIC21.22■□□□□ 0.99
BRCA1P38398 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
BRCA1P38398 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC21.22■□□□□ 0.99
BRCA1P38398 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
BRCA1P38398 AC126763.1-201ENST00000552015 2118 ntBASIC21.22■□□□□ 0.99
BRCA1P38398 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
BRCA1P38398 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC21.22■□□□□ 0.99
BRCA1P38398 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
BRCA1P38398 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRCA1P38398 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC21.22■□□□□ 0.99
BRCA1P38398 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRCA1P38398 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRCA1P38398 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
BRCA1P38398 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
BRCA1P38398 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC21.22■□□□□ 0.99
BRCA1P38398 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC21.22■□□□□ 0.99
BRCA1P38398 ALG1L8P-201ENST00000533887 760 ntBASIC21.22■□□□□ 0.99
BRCA1P38398 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC21.22■□□□□ 0.99
BRCA1P38398 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC21.22■□□□□ 0.99
BRCA1P38398 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC21.22■□□□□ 0.99
BRCA1P38398 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRCA1P38398 AC022144.1-201ENST00000602255 1580 ntBASIC21.22■□□□□ 0.99
BRCA1P38398 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRCA1P38398 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BRCA1P38398 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
BRCA1P38398 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
BRCA1P38398 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC21.21■□□□□ 0.99
BRCA1P38398 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
BRCA1P38398 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BRCA1P38398 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
BRCA1P38398 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC21.21■□□□□ 0.99
BRCA1P38398 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC21.21■□□□□ 0.99
BRCA1P38398 ENSA-206ENST00000361631 725 ntTSL 2 BASIC21.21■□□□□ 0.99
BRCA1P38398 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
BRCA1P38398 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC21.21■□□□□ 0.99
BRCA1P38398 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
BRCA1P38398 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC21.21■□□□□ 0.99
BRCA1P38398 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC21.21■□□□□ 0.99
BRCA1P38398 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BRCA1P38398 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
BRCA1P38398 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BRCA1P38398 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
BRCA1P38398 MYCLP1-201ENST00000372451 1075 ntBASIC21.2■□□□□ 0.98
BRCA1P38398 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC21.2■□□□□ 0.98
BRCA1P38398 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC21.2■□□□□ 0.98
BRCA1P38398 LINC01225-203ENST00000563550 1244 ntBASIC21.2■□□□□ 0.98
BRCA1P38398 AL590560.3-201ENST00000623350 461 ntBASIC21.2■□□□□ 0.98
BRCA1P38398 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
BRCA1P38398 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
BRCA1P38398 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms