Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
RORAP35398 PMPCAP1-201ENST00000508114 1576 ntBASIC16.77■□□□□ 0.27
RORAP35398 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
RORAP35398 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
RORAP35398 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RORAP35398 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.76■□□□□ 0.27
RORAP35398 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RORAP35398 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RORAP35398 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.76■□□□□ 0.27
RORAP35398 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RORAP35398 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
RORAP35398 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.76■□□□□ 0.27
RORAP35398 NEFHP1-201ENST00000412845 2629 ntBASIC16.76■□□□□ 0.27
RORAP35398 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RORAP35398 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
RORAP35398 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.76■□□□□ 0.27
RORAP35398 RPS2P1-201ENST00000434010 821 ntBASIC16.76■□□□□ 0.27
RORAP35398 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RORAP35398 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
RORAP35398 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.76■□□□□ 0.27
RORAP35398 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
RORAP35398 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.76■□□□□ 0.27
RORAP35398 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RORAP35398 NKAPP1-205ENST00000585790 367 ntBASIC16.76■□□□□ 0.27
RORAP35398 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.76■□□□□ 0.27
RORAP35398 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.76■□□□□ 0.27
RORAP35398 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
RORAP35398 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RORAP35398 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
RORAP35398 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RORAP35398 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RORAP35398 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
RORAP35398 FLJ13224-201ENST00000313737 1514 ntBASIC16.75■□□□□ 0.27
RORAP35398 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
RORAP35398 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.75■□□□□ 0.27
RORAP35398 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RORAP35398 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
RORAP35398 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
RORAP35398 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RORAP35398 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.75■□□□□ 0.27
RORAP35398 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.75■□□□□ 0.27
RORAP35398 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
RORAP35398 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.75■□□□□ 0.27
RORAP35398 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RORAP35398 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RORAP35398 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RORAP35398 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
RORAP35398 COX5BP2-201ENST00000392354 334 ntBASIC16.75■□□□□ 0.27
RORAP35398 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.75■□□□□ 0.27
RORAP35398 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
RORAP35398 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.75■□□□□ 0.27
RORAP35398 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
RORAP35398 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.75■□□□□ 0.27
RORAP35398 AC116407.3-201ENST00000623905 1129 ntBASIC16.75■□□□□ 0.27
RORAP35398 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RORAP35398 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RORAP35398 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
RORAP35398 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
RORAP35398 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
RORAP35398 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
RORAP35398 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RORAP35398 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RORAP35398 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
RORAP35398 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RORAP35398 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
RORAP35398 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.74■□□□□ 0.27
RORAP35398 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.74■□□□□ 0.27
RORAP35398 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.74■□□□□ 0.27
RORAP35398 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.74■□□□□ 0.27
RORAP35398 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.74■□□□□ 0.27
RORAP35398 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.74■□□□□ 0.27
RORAP35398 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.74■□□□□ 0.27
RORAP35398 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
RORAP35398 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.74■□□□□ 0.27
RORAP35398 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.74■□□□□ 0.27
RORAP35398 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.74■□□□□ 0.27
RORAP35398 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
RORAP35398 MIR574-201ENST00000385209 96 ntBASIC16.74■□□□□ 0.27
RORAP35398 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
RORAP35398 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.74■□□□□ 0.27
RORAP35398 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.74■□□□□ 0.27
RORAP35398 PMS2P1-201ENST00000431037 1228 ntBASIC16.74■□□□□ 0.27
RORAP35398 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
RORAP35398 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
RORAP35398 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.74■□□□□ 0.27
RORAP35398 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.74■□□□□ 0.27
RORAP35398 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.74■□□□□ 0.27
RORAP35398 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.74■□□□□ 0.27
RORAP35398 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.74■□□□□ 0.27
RORAP35398 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.74■□□□□ 0.27
RORAP35398 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms