Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BDNFP23560 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
BDNFP23560 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
BDNFP23560 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
BDNFP23560 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.59■□□□□ 0.57
BDNFP23560 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
BDNFP23560 MTDHP4-201ENST00000600287 670 ntBASIC18.59■□□□□ 0.57
BDNFP23560 AL049840.3-201ENST00000602669 611 ntBASIC18.59■□□□□ 0.57
BDNFP23560 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
BDNFP23560 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BDNFP23560 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BDNFP23560 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
BDNFP23560 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
BDNFP23560 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.59■□□□□ 0.57
BDNFP23560 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
BDNFP23560 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BDNFP23560 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
BDNFP23560 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
BDNFP23560 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.59■□□□□ 0.57
BDNFP23560 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.59■□□□□ 0.57
BDNFP23560 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
BDNFP23560 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
BDNFP23560 AC012317.2-201ENST00000623305 2251 ntBASIC18.58■□□□□ 0.57
BDNFP23560 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.58■□□□□ 0.57
BDNFP23560 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
BDNFP23560 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
BDNFP23560 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
BDNFP23560 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.58■□□□□ 0.57
BDNFP23560 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
BDNFP23560 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
BDNFP23560 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
BDNFP23560 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.58■□□□□ 0.56
BDNFP23560 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
BDNFP23560 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BDNFP23560 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.58■□□□□ 0.56
BDNFP23560 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
BDNFP23560 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.58■□□□□ 0.56
BDNFP23560 SPDYE21P-201ENST00000413323 827 ntBASIC18.58■□□□□ 0.56
BDNFP23560 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
BDNFP23560 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
BDNFP23560 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.58■□□□□ 0.56
BDNFP23560 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.58■□□□□ 0.56
BDNFP23560 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.58■□□□□ 0.56
BDNFP23560 AC025062.2-201ENST00000605477 670 ntBASIC18.58■□□□□ 0.56
BDNFP23560 FAM215A-202ENST00000632077 792 ntBASIC18.58■□□□□ 0.56
BDNFP23560 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.58■□□□□ 0.56
BDNFP23560 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
BDNFP23560 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BDNFP23560 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
BDNFP23560 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BDNFP23560 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
BDNFP23560 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BDNFP23560 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.58■□□□□ 0.56
BDNFP23560 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.58■□□□□ 0.56
BDNFP23560 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.58■□□□□ 0.56
BDNFP23560 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
BDNFP23560 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.57■□□□□ 0.56
BDNFP23560 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
BDNFP23560 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
BDNFP23560 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
BDNFP23560 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
BDNFP23560 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.57■□□□□ 0.56
BDNFP23560 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.57■□□□□ 0.56
BDNFP23560 IGHV3-52-201ENST00000519770 353 ntBASIC18.57■□□□□ 0.56
BDNFP23560 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.57■□□□□ 0.56
BDNFP23560 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.57■□□□□ 0.56
BDNFP23560 AC073592.4-201ENST00000623827 446 ntBASIC18.57■□□□□ 0.56
BDNFP23560 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.57■□□□□ 0.56
BDNFP23560 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
BDNFP23560 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
BDNFP23560 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 REXO1L11P-201ENST00000620964 1927 ntBASIC18.57■□□□□ 0.56
BDNFP23560 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
BDNFP23560 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
BDNFP23560 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BDNFP23560 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.56■□□□□ 0.56
BDNFP23560 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
BDNFP23560 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BDNFP23560 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.56■□□□□ 0.56
BDNFP23560 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BDNFP23560 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.56■□□□□ 0.56
BDNFP23560 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms