Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ERCC3P19447 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ERCC3P19447 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
ERCC3P19447 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
ERCC3P19447 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
ERCC3P19447 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
ERCC3P19447 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
ERCC3P19447 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ERCC3P19447 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC20.4■□□□□ 0.86
ERCC3P19447 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC20.4■□□□□ 0.86
ERCC3P19447 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.4■□□□□ 0.86
ERCC3P19447 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC20.4■□□□□ 0.86
ERCC3P19447 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
ERCC3P19447 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
ERCC3P19447 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC20.4■□□□□ 0.86
ERCC3P19447 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.4■□□□□ 0.86
ERCC3P19447 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC20.4■□□□□ 0.86
ERCC3P19447 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.4■□□□□ 0.86
ERCC3P19447 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
ERCC3P19447 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC20.4■□□□□ 0.86
ERCC3P19447 AR-207ENST00000612010 3896 ntTSL 5 BASIC20.4■□□□□ 0.86
ERCC3P19447 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC20.4■□□□□ 0.86
ERCC3P19447 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
ERCC3P19447 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC20.4■□□□□ 0.86
ERCC3P19447 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
ERCC3P19447 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
ERCC3P19447 WAC-202ENST00000347934 2839 ntTSL 5 BASIC20.39■□□□□ 0.85
ERCC3P19447 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ERCC3P19447 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ERCC3P19447 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ERCC3P19447 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
ERCC3P19447 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.39■□□□□ 0.85
ERCC3P19447 AC122714.2-201ENST00000502787 707 ntBASIC20.39■□□□□ 0.85
ERCC3P19447 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC20.39■□□□□ 0.85
ERCC3P19447 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC20.39■□□□□ 0.85
ERCC3P19447 AC010327.4-202ENST00000591484 748 ntBASIC20.39■□□□□ 0.85
ERCC3P19447 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC20.39■□□□□ 0.85
ERCC3P19447 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC20.39■□□□□ 0.85
ERCC3P19447 AL691403.2-201ENST00000618460 490 ntBASIC20.39■□□□□ 0.85
ERCC3P19447 AD001527.2-201ENST00000622994 785 ntBASIC20.39■□□□□ 0.85
ERCC3P19447 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC20.39■□□□□ 0.85
ERCC3P19447 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
ERCC3P19447 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.39■□□□□ 0.85
ERCC3P19447 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ERCC3P19447 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.39■□□□□ 0.85
ERCC3P19447 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
ERCC3P19447 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
ERCC3P19447 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ERCC3P19447 AL390961.4-201ENST00000623958 2535 ntBASIC20.38■□□□□ 0.85
ERCC3P19447 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC3P19447 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC20.38■□□□□ 0.85
ERCC3P19447 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC3P19447 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC3P19447 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC3P19447 KRT8P47-201ENST00000604727 1398 ntBASIC20.38■□□□□ 0.85
ERCC3P19447 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC3P19447 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC3P19447 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.38■□□□□ 0.85
ERCC3P19447 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC3P19447 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC3P19447 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC3P19447 UPF3AP3-201ENST00000420996 769 ntBASIC20.38■□□□□ 0.85
ERCC3P19447 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC3P19447 AL139424.1-201ENST00000607572 797 ntBASIC20.38■□□□□ 0.85
ERCC3P19447 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.38■□□□□ 0.85
ERCC3P19447 AC073592.4-201ENST00000623827 446 ntBASIC20.38■□□□□ 0.85
ERCC3P19447 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC3P19447 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
ERCC3P19447 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
ERCC3P19447 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC3P19447 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC3P19447 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.38■□□□□ 0.85
ERCC3P19447 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
ERCC3P19447 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
ERCC3P19447 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC3P19447 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC20.37■□□□□ 0.85
ERCC3P19447 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC3P19447 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC3P19447 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC3P19447 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC3P19447 PHGDH-209ENST00000641074 1780 ntBASIC20.37■□□□□ 0.85
ERCC3P19447 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC3P19447 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC3P19447 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC20.37■□□□□ 0.85
ERCC3P19447 RPSAP43-201ENST00000402237 625 ntBASIC20.37■□□□□ 0.85
ERCC3P19447 AC007967.2-201ENST00000432613 625 ntBASIC20.37■□□□□ 0.85
ERCC3P19447 AC009947.1-201ENST00000444350 727 ntBASIC20.37■□□□□ 0.85
ERCC3P19447 HS6ST1P1-201ENST00000481504 1234 ntBASIC20.37■□□□□ 0.85
ERCC3P19447 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.37■□□□□ 0.85
ERCC3P19447 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
ERCC3P19447 SDCCAG3P1-201ENST00000589292 1150 ntBASIC20.37■□□□□ 0.85
ERCC3P19447 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.37■□□□□ 0.85
ERCC3P19447 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC3P19447 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC3P19447 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC3P19447 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.37■□□□□ 0.85
ERCC3P19447 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC3P19447 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC3P19447 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ERCC3P19447 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms