Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
SEMA3DO95025 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
SEMA3DO95025 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 FAM86EP-206ENST00000510506 987 ntBASIC16.92■□□□□ 0.3
SEMA3DO95025 CD320-202ENST00000537716 1119 ntTSL 2 BASIC16.92■□□□□ 0.3
SEMA3DO95025 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.92■□□□□ 0.3
SEMA3DO95025 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
SEMA3DO95025 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.92■□□□□ 0.3
SEMA3DO95025 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
SEMA3DO95025 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.92■□□□□ 0.3
SEMA3DO95025 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.92■□□□□ 0.3
SEMA3DO95025 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.92■□□□□ 0.3
SEMA3DO95025 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
SEMA3DO95025 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.91■□□□□ 0.3
SEMA3DO95025 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
SEMA3DO95025 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.91■□□□□ 0.3
SEMA3DO95025 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.91■□□□□ 0.3
SEMA3DO95025 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SEMA3DO95025 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.91■□□□□ 0.3
SEMA3DO95025 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.91■□□□□ 0.3
SEMA3DO95025 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SEMA3DO95025 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SEMA3DO95025 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SEMA3DO95025 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.91■□□□□ 0.3
SEMA3DO95025 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.91■□□□□ 0.3
SEMA3DO95025 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SEMA3DO95025 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SEMA3DO95025 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SEMA3DO95025 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SEMA3DO95025 AC246785.2-201ENST00000432512 513 ntBASIC16.91■□□□□ 0.3
SEMA3DO95025 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SEMA3DO95025 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.91■□□□□ 0.3
SEMA3DO95025 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SEMA3DO95025 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.91■□□□□ 0.3
SEMA3DO95025 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.91■□□□□ 0.3
SEMA3DO95025 AL121672.3-201ENST00000608644 468 ntBASIC16.91■□□□□ 0.3
SEMA3DO95025 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.91■□□□□ 0.3
SEMA3DO95025 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
SEMA3DO95025 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.91■□□□□ 0.3
SEMA3DO95025 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SEMA3DO95025 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SEMA3DO95025 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SEMA3DO95025 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
SEMA3DO95025 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SEMA3DO95025 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.91■□□□□ 0.3
SEMA3DO95025 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SEMA3DO95025 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SEMA3DO95025 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SEMA3DO95025 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.9■□□□□ 0.3
SEMA3DO95025 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
SEMA3DO95025 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.9■□□□□ 0.3
SEMA3DO95025 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SEMA3DO95025 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SEMA3DO95025 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SEMA3DO95025 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
SEMA3DO95025 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.9■□□□□ 0.3
SEMA3DO95025 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
SEMA3DO95025 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.9■□□□□ 0.3
SEMA3DO95025 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SEMA3DO95025 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.9■□□□□ 0.3
SEMA3DO95025 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
SEMA3DO95025 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.9■□□□□ 0.3
SEMA3DO95025 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.9■□□□□ 0.3
SEMA3DO95025 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.9■□□□□ 0.3
SEMA3DO95025 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.9■□□□□ 0.3
SEMA3DO95025 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.9■□□□□ 0.3
SEMA3DO95025 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.9■□□□□ 0.3
SEMA3DO95025 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.9■□□□□ 0.3
SEMA3DO95025 IGHV3-41-201ENST00000613121 348 ntBASIC16.9■□□□□ 0.3
SEMA3DO95025 AC116407.4-201ENST00000623319 1061 ntBASIC16.9■□□□□ 0.3
SEMA3DO95025 AC124864.1-201ENST00000623408 392 ntBASIC16.9■□□□□ 0.3
SEMA3DO95025 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.9■□□□□ 0.3
SEMA3DO95025 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.9■□□□□ 0.3
SEMA3DO95025 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SEMA3DO95025 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SEMA3DO95025 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
SEMA3DO95025 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SEMA3DO95025 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SEMA3DO95025 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SEMA3DO95025 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.9■□□□□ 0.3
SEMA3DO95025 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
SEMA3DO95025 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SEMA3DO95025 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms