Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 AC246785.2-201ENST00000432512 513 ntBASIC18.93■□□□□ 0.62
SIX2Q9NPC8 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 AL121672.3-201ENST00000608644 468 ntBASIC18.93■□□□□ 0.62
SIX2Q9NPC8 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 BX276092.5-203ENST00000456199 560 ntBASIC18.92■□□□□ 0.62
SIX2Q9NPC8 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.92■□□□□ 0.62
SIX2Q9NPC8 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SIX2Q9NPC8 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 PCED1CP-201ENST00000419887 785 ntBASIC18.91■□□□□ 0.62
SIX2Q9NPC8 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SIX2Q9NPC8 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 TPSP2-201ENST00000561760 610 ntBASIC18.9■□□□□ 0.62
SIX2Q9NPC8 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 AD000864.1-201ENST00000624076 2295 ntBASIC18.9■□□□□ 0.62
SIX2Q9NPC8 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms