Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC21.08■□□□□ 0.97
CHMP4CQ96CF2 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC21.08■□□□□ 0.97
CHMP4CQ96CF2 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
CHMP4CQ96CF2 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
CHMP4CQ96CF2 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC21.08■□□□□ 0.97
CHMP4CQ96CF2 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CHMP4CQ96CF2 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CHMP4CQ96CF2 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CHMP4CQ96CF2 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CHMP4CQ96CF2 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CHMP4CQ96CF2 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
CHMP4CQ96CF2 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CHMP4CQ96CF2 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CHMP4CQ96CF2 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC21.08■□□□□ 0.97
CHMP4CQ96CF2 KRT18P31-201ENST00000506277 1292 ntBASIC21.08■□□□□ 0.97
CHMP4CQ96CF2 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC21.08■□□□□ 0.97
CHMP4CQ96CF2 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC21.08■□□□□ 0.97
CHMP4CQ96CF2 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC21.08■□□□□ 0.97
CHMP4CQ96CF2 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CHMP4CQ96CF2 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CHMP4CQ96CF2 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
CHMP4CQ96CF2 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC21.08■□□□□ 0.96
CHMP4CQ96CF2 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC21.08■□□□□ 0.96
CHMP4CQ96CF2 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC21.08■□□□□ 0.96
CHMP4CQ96CF2 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CHMP4CQ96CF2 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CHMP4CQ96CF2 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 NME9-203ENST00000383180 2133 ntTSL 2 BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 AC026396.1-201ENST00000419388 421 ntBASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 AC246785.2-201ENST00000432512 513 ntBASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC21.07■□□□□ 0.96
CHMP4CQ96CF2 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 TSPY19P-201ENST00000418461 509 ntBASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 TSPY18P-201ENST00000441642 509 ntBASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 NUS1P1-201ENST00000446295 882 ntBASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 AC067852.2-201ENST00000590513 2313 ntBASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
CHMP4CQ96CF2 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms