Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
RTF1Q92541 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC23.01■■□□□ 1.27
RTF1Q92541 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC23.01■■□□□ 1.27
RTF1Q92541 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC23.01■■□□□ 1.27
RTF1Q92541 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC23.01■■□□□ 1.27
RTF1Q92541 AC105339.3-201ENST00000560043 636 ntBASIC23.01■■□□□ 1.27
RTF1Q92541 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC23.01■■□□□ 1.27
RTF1Q92541 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC23.01■■□□□ 1.27
RTF1Q92541 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC23.01■■□□□ 1.27
RTF1Q92541 COPE-211ENST00000600932 1144 ntTSL 5 BASIC23.01■■□□□ 1.27
RTF1Q92541 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC23.01■■□□□ 1.27
RTF1Q92541 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
RTF1Q92541 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
RTF1Q92541 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
RTF1Q92541 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
RTF1Q92541 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
RTF1Q92541 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
RTF1Q92541 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC23■■□□□ 1.27
RTF1Q92541 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC23■■□□□ 1.27
RTF1Q92541 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
RTF1Q92541 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
RTF1Q92541 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
RTF1Q92541 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC23■■□□□ 1.27
RTF1Q92541 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
RTF1Q92541 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
RTF1Q92541 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC23■■□□□ 1.27
RTF1Q92541 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC23■■□□□ 1.27
RTF1Q92541 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
RTF1Q92541 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC23■■□□□ 1.27
RTF1Q92541 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC23■■□□□ 1.27
RTF1Q92541 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
RTF1Q92541 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC23■■□□□ 1.27
RTF1Q92541 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC23■■□□□ 1.27
RTF1Q92541 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC23■■□□□ 1.27
RTF1Q92541 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC23■■□□□ 1.27
RTF1Q92541 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
RTF1Q92541 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC23■■□□□ 1.27
RTF1Q92541 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
RTF1Q92541 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC23■■□□□ 1.27
RTF1Q92541 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC23■■□□□ 1.27
RTF1Q92541 HLA-DQB1-201ENST00000374943 1656 ntBASIC23■■□□□ 1.27
RTF1Q92541 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
RTF1Q92541 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
RTF1Q92541 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC22.99■■□□□ 1.27
RTF1Q92541 MCC-208ENST00000514701 2855 ntTSL 2 BASIC22.99■■□□□ 1.27
RTF1Q92541 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
RTF1Q92541 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
RTF1Q92541 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
RTF1Q92541 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
RTF1Q92541 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
RTF1Q92541 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
RTF1Q92541 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
RTF1Q92541 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC22.99■■□□□ 1.27
RTF1Q92541 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
RTF1Q92541 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
RTF1Q92541 RPL18-209ENST00000550645 463 ntTSL 5 BASIC22.99■■□□□ 1.27
RTF1Q92541 RPL18-214ENST00000552588 559 ntTSL 3 BASIC22.99■■□□□ 1.27
RTF1Q92541 AC106730.1-201ENST00000566722 1090 ntBASIC22.99■■□□□ 1.27
RTF1Q92541 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC22.99■■□□□ 1.27
RTF1Q92541 SDCCAG3P1-201ENST00000589292 1150 ntBASIC22.99■■□□□ 1.27
RTF1Q92541 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC22.99■■□□□ 1.27
RTF1Q92541 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC22.99■■□□□ 1.27
RTF1Q92541 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC22.99■■□□□ 1.27
RTF1Q92541 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC22.99■■□□□ 1.27
RTF1Q92541 AC148477.5-201ENST00000625164 1645 ntBASIC22.99■■□□□ 1.27
RTF1Q92541 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
RTF1Q92541 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
RTF1Q92541 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
RTF1Q92541 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
RTF1Q92541 HARS-201ENST00000307633 1780 ntTSL 2 BASIC22.99■■□□□ 1.27
RTF1Q92541 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
RTF1Q92541 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
RTF1Q92541 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC22.98■■□□□ 1.27
RTF1Q92541 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC22.98■■□□□ 1.27
RTF1Q92541 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
RTF1Q92541 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
RTF1Q92541 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
RTF1Q92541 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
RTF1Q92541 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
RTF1Q92541 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC22.98■■□□□ 1.27
RTF1Q92541 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC22.98■■□□□ 1.27
RTF1Q92541 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC22.98■■□□□ 1.27
RTF1Q92541 MIR574-201ENST00000385209 96 ntBASIC22.98■■□□□ 1.27
RTF1Q92541 PMS2P1-201ENST00000431037 1228 ntBASIC22.98■■□□□ 1.27
RTF1Q92541 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC22.98■■□□□ 1.27
RTF1Q92541 SIGLEC30P-201ENST00000455569 941 ntBASIC22.98■■□□□ 1.27
RTF1Q92541 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC22.98■■□□□ 1.27
RTF1Q92541 AC002558.1-201ENST00000488906 803 ntBASIC22.98■■□□□ 1.27
RTF1Q92541 STK19B-204ENST00000512515 211 ntBASIC22.98■■□□□ 1.27
RTF1Q92541 IGHV3-22-201ENST00000520721 359 ntBASIC22.98■■□□□ 1.27
RTF1Q92541 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
RTF1Q92541 STK25P1-201ENST00000585406 838 ntBASIC22.98■■□□□ 1.27
RTF1Q92541 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
RTF1Q92541 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC22.98■■□□□ 1.27
RTF1Q92541 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
RTF1Q92541 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
RTF1Q92541 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
RTF1Q92541 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
RTF1Q92541 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
RTF1Q92541 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms