Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
USP39Q53GS9 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP39Q53GS9 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP39Q53GS9 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP39Q53GS9 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP39Q53GS9 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.96■□□□□ 0.47
USP39Q53GS9 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP39Q53GS9 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
USP39Q53GS9 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP39Q53GS9 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP39Q53GS9 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.96■□□□□ 0.47
USP39Q53GS9 YBX2P1-201ENST00000394192 760 ntBASIC17.96■□□□□ 0.47
USP39Q53GS9 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.96■□□□□ 0.47
USP39Q53GS9 AC112698.1-201ENST00000510299 916 ntBASIC17.96■□□□□ 0.47
USP39Q53GS9 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.96■□□□□ 0.47
USP39Q53GS9 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.96■□□□□ 0.47
USP39Q53GS9 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.96■□□□□ 0.47
USP39Q53GS9 AL139424.1-201ENST00000607572 797 ntBASIC17.96■□□□□ 0.47
USP39Q53GS9 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.96■□□□□ 0.47
USP39Q53GS9 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.96■□□□□ 0.47
USP39Q53GS9 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
USP39Q53GS9 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
USP39Q53GS9 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
USP39Q53GS9 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP39Q53GS9 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP39Q53GS9 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP39Q53GS9 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.96■□□□□ 0.47
USP39Q53GS9 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
USP39Q53GS9 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
USP39Q53GS9 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP39Q53GS9 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
USP39Q53GS9 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
USP39Q53GS9 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP39Q53GS9 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP39Q53GS9 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP39Q53GS9 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP39Q53GS9 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP39Q53GS9 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
USP39Q53GS9 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
USP39Q53GS9 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP39Q53GS9 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.95■□□□□ 0.46
USP39Q53GS9 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP39Q53GS9 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.95■□□□□ 0.46
USP39Q53GS9 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP39Q53GS9 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP39Q53GS9 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP39Q53GS9 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
USP39Q53GS9 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.95■□□□□ 0.46
USP39Q53GS9 RPS8P6-201ENST00000426177 609 ntBASIC17.95■□□□□ 0.46
USP39Q53GS9 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.95■□□□□ 0.46
USP39Q53GS9 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.95■□□□□ 0.46
USP39Q53GS9 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.95■□□□□ 0.46
USP39Q53GS9 AC112482.1-201ENST00000492080 688 ntBASIC17.95■□□□□ 0.46
USP39Q53GS9 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.95■□□□□ 0.46
USP39Q53GS9 UNC93B6-202ENST00000528242 690 ntBASIC17.95■□□□□ 0.46
USP39Q53GS9 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.95■□□□□ 0.46
USP39Q53GS9 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.95■□□□□ 0.46
USP39Q53GS9 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP39Q53GS9 AP001160.2-201ENST00000596071 487 ntBASIC17.95■□□□□ 0.46
USP39Q53GS9 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
USP39Q53GS9 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
USP39Q53GS9 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP39Q53GS9 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP39Q53GS9 NOC2LP1-202ENST00000452600 2235 ntBASIC17.95■□□□□ 0.46
USP39Q53GS9 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP39Q53GS9 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.95■□□□□ 0.46
USP39Q53GS9 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP39Q53GS9 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP39Q53GS9 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP39Q53GS9 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
USP39Q53GS9 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP39Q53GS9 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP39Q53GS9 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP39Q53GS9 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP39Q53GS9 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP39Q53GS9 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
USP39Q53GS9 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP39Q53GS9 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP39Q53GS9 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP39Q53GS9 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.94■□□□□ 0.46
USP39Q53GS9 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.94■□□□□ 0.46
USP39Q53GS9 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP39Q53GS9 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
USP39Q53GS9 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP39Q53GS9 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.94■□□□□ 0.46
USP39Q53GS9 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP39Q53GS9 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
USP39Q53GS9 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.94■□□□□ 0.46
USP39Q53GS9 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.94■□□□□ 0.46
USP39Q53GS9 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.94■□□□□ 0.46
USP39Q53GS9 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.94■□□□□ 0.46
USP39Q53GS9 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.94■□□□□ 0.46
USP39Q53GS9 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.94■□□□□ 0.46
USP39Q53GS9 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP39Q53GS9 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP39Q53GS9 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP39Q53GS9 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP39Q53GS9 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.94■□□□□ 0.46
USP39Q53GS9 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.94■□□□□ 0.46
USP39Q53GS9 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms