Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 KIRREL3-AS3-201ENST00000404882 831 ntBASIC13.57□□□□□ -0.24
HIST1H1AQ02539 HMGA1P5-201ENST00000412453 271 ntBASIC13.57□□□□□ -0.24
HIST1H1AQ02539 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 AC006116.8-202ENST00000587620 1550 ntBASIC13.57□□□□□ -0.24
HIST1H1AQ02539 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 AL024508.2-201ENST00000607749 1894 ntBASIC13.57□□□□□ -0.24
HIST1H1AQ02539 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
HIST1H1AQ02539 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 KRT18P55-202ENST00000578578 1546 ntBASIC13.56□□□□□ -0.24
HIST1H1AQ02539 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 CRAT-202ENST00000393384 973 ntTSL 2 BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 AC093827.2-201ENST00000512654 315 ntBASIC13.56□□□□□ -0.24
HIST1H1AQ02539 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 FAM87A-204ENST00000613235 858 ntBASIC13.56□□□□□ -0.24
HIST1H1AQ02539 AC092865.7-201ENST00000641832 219 ntBASIC13.56□□□□□ -0.24
HIST1H1AQ02539 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 NF2-208ENST00000403435 2568 ntTSL 5 BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 NKILA-202ENST00000614771 2598 ntBASIC13.56□□□□□ -0.24
HIST1H1AQ02539 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 LINC01568-207ENST00000641790 1380 ntBASIC13.56□□□□□ -0.24
HIST1H1AQ02539 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H1AQ02539 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC13.55□□□□□ -0.24
HIST1H1AQ02539 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC13.55□□□□□ -0.24
HIST1H1AQ02539 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HIST1H1AQ02539 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HIST1H1AQ02539 NME9-203ENST00000383180 2133 ntTSL 2 BASIC13.55□□□□□ -0.24
HIST1H1AQ02539 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIST1H1AQ02539 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
HIST1H1AQ02539 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms