Protein–RNA interactions for Protein: P78415

IRX3, Iroquois-class homeodomain protein IRX-3, humanhuman

Predicted RBP Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX3P78415 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
IRX3P78415 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
IRX3P78415 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
IRX3P78415 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
IRX3P78415 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
IRX3P78415 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
IRX3P78415 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.53■□□□□ 0.88
IRX3P78415 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
IRX3P78415 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
IRX3P78415 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
IRX3P78415 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
IRX3P78415 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.52■□□□□ 0.88
IRX3P78415 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.88
IRX3P78415 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
IRX3P78415 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
IRX3P78415 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.52■□□□□ 0.88
IRX3P78415 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
IRX3P78415 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
IRX3P78415 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
IRX3P78415 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
IRX3P78415 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
IRX3P78415 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC20.52■□□□□ 0.88
IRX3P78415 AC073621.1-201ENST00000392730 636 ntBASIC20.52■□□□□ 0.88
IRX3P78415 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
IRX3P78415 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC20.52■□□□□ 0.88
IRX3P78415 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC20.52■□□□□ 0.88
IRX3P78415 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC20.52■□□□□ 0.88
IRX3P78415 MTDHP5-201ENST00000598980 586 ntBASIC20.52■□□□□ 0.88
IRX3P78415 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC20.52■□□□□ 0.88
IRX3P78415 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
IRX3P78415 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
IRX3P78415 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
IRX3P78415 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
IRX3P78415 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
IRX3P78415 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.52■□□□□ 0.88
IRX3P78415 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
IRX3P78415 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
IRX3P78415 AC022898.2-201ENST00000616822 1312 ntBASIC20.52■□□□□ 0.87
IRX3P78415 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
IRX3P78415 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC20.51■□□□□ 0.87
IRX3P78415 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
IRX3P78415 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.51■□□□□ 0.87
IRX3P78415 AC126763.1-201ENST00000552015 2118 ntBASIC20.51■□□□□ 0.87
IRX3P78415 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
IRX3P78415 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC20.51■□□□□ 0.87
IRX3P78415 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
IRX3P78415 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
IRX3P78415 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
IRX3P78415 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.51■□□□□ 0.87
IRX3P78415 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
IRX3P78415 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
IRX3P78415 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
IRX3P78415 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
IRX3P78415 COA5-202ENST00000409997 557 ntTSL 4 BASIC20.51■□□□□ 0.87
IRX3P78415 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.51■□□□□ 0.87
IRX3P78415 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.51■□□□□ 0.87
IRX3P78415 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC20.51■□□□□ 0.87
IRX3P78415 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.51■□□□□ 0.87
IRX3P78415 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC20.51■□□□□ 0.87
IRX3P78415 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
IRX3P78415 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC20.51■□□□□ 0.87
IRX3P78415 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
IRX3P78415 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC20.51■□□□□ 0.87
IRX3P78415 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
IRX3P78415 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
IRX3P78415 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
IRX3P78415 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
IRX3P78415 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
IRX3P78415 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
IRX3P78415 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
IRX3P78415 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
IRX3P78415 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.51■□□□□ 0.87
IRX3P78415 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
IRX3P78415 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
IRX3P78415 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.51■□□□□ 0.87
IRX3P78415 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
IRX3P78415 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
IRX3P78415 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
IRX3P78415 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
IRX3P78415 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
IRX3P78415 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
IRX3P78415 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
IRX3P78415 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.5■□□□□ 0.87
IRX3P78415 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC20.5■□□□□ 0.87
IRX3P78415 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
IRX3P78415 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
IRX3P78415 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
IRX3P78415 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
IRX3P78415 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC20.5■□□□□ 0.87
IRX3P78415 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
IRX3P78415 PON3-205ENST00000451904 1053 ntTSL 3 BASIC20.5■□□□□ 0.87
IRX3P78415 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC20.5■□□□□ 0.87
IRX3P78415 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC20.5■□□□□ 0.87
IRX3P78415 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.5■□□□□ 0.87
IRX3P78415 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC20.5■□□□□ 0.87
IRX3P78415 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC20.5■□□□□ 0.87
IRX3P78415 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
IRX3P78415 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
IRX3P78415 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC20.5■□□□□ 0.87
IRX3P78415 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms