Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.16■□□□□ 0.34
HNF4AP41235 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.16■□□□□ 0.34
HNF4AP41235 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.16■□□□□ 0.34
HNF4AP41235 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.16■□□□□ 0.34
HNF4AP41235 BX276092.5-203ENST00000456199 560 ntBASIC17.16■□□□□ 0.34
HNF4AP41235 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.16■□□□□ 0.34
HNF4AP41235 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.16■□□□□ 0.34
HNF4AP41235 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.16■□□□□ 0.34
HNF4AP41235 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
HNF4AP41235 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.16■□□□□ 0.34
HNF4AP41235 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.16■□□□□ 0.34
HNF4AP41235 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
HNF4AP41235 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
HNF4AP41235 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 PRORSD1P-202ENST00000563365 2154 ntBASIC17.16■□□□□ 0.34
HNF4AP41235 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
HNF4AP41235 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.16■□□□□ 0.34
HNF4AP41235 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.16■□□□□ 0.34
HNF4AP41235 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.16■□□□□ 0.34
HNF4AP41235 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.16■□□□□ 0.34
HNF4AP41235 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
HNF4AP41235 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HNF4AP41235 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
HNF4AP41235 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HNF4AP41235 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HNF4AP41235 HLA-J-201ENST00000462773 1622 ntBASIC17.15■□□□□ 0.34
HNF4AP41235 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HNF4AP41235 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
HNF4AP41235 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.15■□□□□ 0.34
HNF4AP41235 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HNF4AP41235 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HNF4AP41235 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HNF4AP41235 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HNF4AP41235 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
HNF4AP41235 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.15■□□□□ 0.34
HNF4AP41235 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HNF4AP41235 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.15■□□□□ 0.34
HNF4AP41235 IGHV3-41-201ENST00000613121 348 ntBASIC17.15■□□□□ 0.34
HNF4AP41235 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
HNF4AP41235 AP000550.4-202ENST00000639755 178 ntBASIC17.15■□□□□ 0.34
HNF4AP41235 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.15■□□□□ 0.34
HNF4AP41235 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.15■□□□□ 0.34
HNF4AP41235 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.15■□□□□ 0.34
HNF4AP41235 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HNF4AP41235 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.15■□□□□ 0.34
HNF4AP41235 BX276092.7-203ENST00000637198 1536 ntBASIC17.15■□□□□ 0.34
HNF4AP41235 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HNF4AP41235 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
HNF4AP41235 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HNF4AP41235 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
HNF4AP41235 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
HNF4AP41235 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.14■□□□□ 0.34
HNF4AP41235 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.14■□□□□ 0.34
HNF4AP41235 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
HNF4AP41235 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.14■□□□□ 0.33
HNF4AP41235 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HNF4AP41235 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HNF4AP41235 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HNF4AP41235 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HNF4AP41235 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HNF4AP41235 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HNF4AP41235 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.14■□□□□ 0.33
HNF4AP41235 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.14■□□□□ 0.33
HNF4AP41235 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HNF4AP41235 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HNF4AP41235 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HNF4AP41235 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.14■□□□□ 0.33
HNF4AP41235 GUSBP12-201ENST00000513727 720 ntBASIC17.14■□□□□ 0.33
HNF4AP41235 KRT8P26-201ENST00000534154 1276 ntBASIC17.14■□□□□ 0.33
HNF4AP41235 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.14■□□□□ 0.33
HNF4AP41235 AC124864.1-201ENST00000623408 392 ntBASIC17.14■□□□□ 0.33
HNF4AP41235 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.14■□□□□ 0.33
HNF4AP41235 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HNF4AP41235 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
HNF4AP41235 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HNF4AP41235 AL138688.1-201ENST00000624851 1594 ntBASIC17.14■□□□□ 0.33
HNF4AP41235 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.14■□□□□ 0.33
HNF4AP41235 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HNF4AP41235 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.14■□□□□ 0.33
HNF4AP41235 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HNF4AP41235 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
HNF4AP41235 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms