Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
MSX2P35548 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSX2P35548 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
MSX2P35548 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX2P35548 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.9■□□□□ 0.3
MSX2P35548 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
MSX2P35548 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.9■□□□□ 0.3
MSX2P35548 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
MSX2P35548 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX2P35548 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX2P35548 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX2P35548 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
MSX2P35548 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
MSX2P35548 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.89■□□□□ 0.3
MSX2P35548 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX2P35548 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
MSX2P35548 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX2P35548 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
MSX2P35548 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX2P35548 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX2P35548 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX2P35548 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MSX2P35548 FAM197Y1-201ENST00000421178 764 ntBASIC16.89■□□□□ 0.29
MSX2P35548 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX2P35548 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC16.89■□□□□ 0.29
MSX2P35548 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MSX2P35548 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.89■□□□□ 0.29
MSX2P35548 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
MSX2P35548 AC073648.6-201ENST00000641589 218 ntBASIC16.89■□□□□ 0.29
MSX2P35548 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.89■□□□□ 0.29
MSX2P35548 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
MSX2P35548 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.89■□□□□ 0.29
MSX2P35548 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX2P35548 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
MSX2P35548 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX2P35548 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MSX2P35548 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
MSX2P35548 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX2P35548 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX2P35548 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX2P35548 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX2P35548 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MSX2P35548 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX2P35548 AL662844.4-201ENST00000606367 2838 ntBASIC16.88■□□□□ 0.29
MSX2P35548 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
MSX2P35548 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.88■□□□□ 0.29
MSX2P35548 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.88■□□□□ 0.29
MSX2P35548 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
MSX2P35548 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
MSX2P35548 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
MSX2P35548 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 RNF121-214ENST00000533380 870 ntTSL 3 BASIC16.88■□□□□ 0.29
MSX2P35548 RARRES2P10-201ENST00000564312 460 ntBASIC16.88■□□□□ 0.29
MSX2P35548 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.88■□□□□ 0.29
MSX2P35548 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.88■□□□□ 0.29
MSX2P35548 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
MSX2P35548 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.88■□□□□ 0.29
MSX2P35548 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.88■□□□□ 0.29
MSX2P35548 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX2P35548 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
MSX2P35548 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.87■□□□□ 0.29
MSX2P35548 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.87■□□□□ 0.29
MSX2P35548 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.87■□□□□ 0.29
MSX2P35548 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms