Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SHMT2P34897 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SHMT2P34897 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
SHMT2P34897 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SHMT2P34897 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.32■□□□□ 0.36
SHMT2P34897 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.32■□□□□ 0.36
SHMT2P34897 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.32■□□□□ 0.36
SHMT2P34897 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.32■□□□□ 0.36
SHMT2P34897 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.31■□□□□ 0.36
SHMT2P34897 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SHMT2P34897 TNRC18P3-201ENST00000441896 2691 ntBASIC17.31■□□□□ 0.36
SHMT2P34897 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SHMT2P34897 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.31■□□□□ 0.36
SHMT2P34897 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.31■□□□□ 0.36
SHMT2P34897 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 AC009533.2-201ENST00000543664 586 ntBASIC17.31■□□□□ 0.36
SHMT2P34897 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.31■□□□□ 0.36
SHMT2P34897 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.31■□□□□ 0.36
SHMT2P34897 AL138831.2-201ENST00000606564 490 ntBASIC17.31■□□□□ 0.36
SHMT2P34897 AL121772.3-201ENST00000610840 674 ntBASIC17.31■□□□□ 0.36
SHMT2P34897 AC116407.2-201ENST00000613639 860 ntBASIC17.31■□□□□ 0.36
SHMT2P34897 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.31■□□□□ 0.36
SHMT2P34897 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 AC124067.4-201ENST00000519691 2379 ntBASIC17.31■□□□□ 0.36
SHMT2P34897 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.31■□□□□ 0.36
SHMT2P34897 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 AC012317.2-201ENST00000623305 2251 ntBASIC17.31■□□□□ 0.36
SHMT2P34897 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SHMT2P34897 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SHMT2P34897 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHMT2P34897 AC125634.1-201ENST00000438758 1403 ntBASIC17.3■□□□□ 0.36
SHMT2P34897 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.3■□□□□ 0.36
SHMT2P34897 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHMT2P34897 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
SHMT2P34897 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHMT2P34897 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHMT2P34897 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.3■□□□□ 0.36
SHMT2P34897 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.3■□□□□ 0.36
SHMT2P34897 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHMT2P34897 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHMT2P34897 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SHMT2P34897 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHMT2P34897 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SHMT2P34897 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHMT2P34897 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHMT2P34897 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.3■□□□□ 0.36
SHMT2P34897 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHMT2P34897 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHMT2P34897 POM121L3P-201ENST00000419331 1163 ntBASIC17.3■□□□□ 0.36
SHMT2P34897 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SHMT2P34897 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.3■□□□□ 0.36
SHMT2P34897 AC138894.3-201ENST00000603787 634 ntBASIC17.3■□□□□ 0.36
SHMT2P34897 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.3■□□□□ 0.36
SHMT2P34897 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SHMT2P34897 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.3■□□□□ 0.36
SHMT2P34897 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHMT2P34897 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.3■□□□□ 0.36
SHMT2P34897 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHMT2P34897 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHMT2P34897 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.3■□□□□ 0.36
SHMT2P34897 AC138028.4-201ENST00000564984 1845 ntBASIC17.3■□□□□ 0.36
SHMT2P34897 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms