Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA3P32297 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA3P32297 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA3P32297 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA3P32297 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA3P32297 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA3P32297 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA3P32297 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA3P32297 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA3P32297 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.65■□□□□ 0.58
CHRNA3P32297 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.65■□□□□ 0.58
CHRNA3P32297 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA3P32297 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CHRNA3P32297 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.65■□□□□ 0.58
CHRNA3P32297 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.65■□□□□ 0.58
CHRNA3P32297 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
CHRNA3P32297 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CHRNA3P32297 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA3P32297 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA3P32297 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.64■□□□□ 0.57
CHRNA3P32297 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA3P32297 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA3P32297 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA3P32297 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
CHRNA3P32297 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.64■□□□□ 0.57
CHRNA3P32297 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.64■□□□□ 0.57
CHRNA3P32297 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.64■□□□□ 0.57
CHRNA3P32297 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.64■□□□□ 0.57
CHRNA3P32297 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.64■□□□□ 0.57
CHRNA3P32297 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.64■□□□□ 0.57
CHRNA3P32297 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA3P32297 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.64■□□□□ 0.57
CHRNA3P32297 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
CHRNA3P32297 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.57
CHRNA3P32297 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA3P32297 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA3P32297 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.64■□□□□ 0.57
CHRNA3P32297 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA3P32297 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.63■□□□□ 0.57
CHRNA3P32297 HLA-J-201ENST00000462773 1622 ntBASIC18.63■□□□□ 0.57
CHRNA3P32297 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA3P32297 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA3P32297 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.63■□□□□ 0.57
CHRNA3P32297 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.63■□□□□ 0.57
CHRNA3P32297 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA3P32297 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CHRNA3P32297 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
CHRNA3P32297 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.63■□□□□ 0.57
CHRNA3P32297 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA3P32297 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA3P32297 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA3P32297 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.63■□□□□ 0.57
CHRNA3P32297 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA3P32297 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA3P32297 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA3P32297 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.63■□□□□ 0.57
CHRNA3P32297 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.63■□□□□ 0.57
CHRNA3P32297 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.63■□□□□ 0.57
CHRNA3P32297 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.63■□□□□ 0.57
CHRNA3P32297 AC011498.5-201ENST00000592027 486 ntBASIC18.63■□□□□ 0.57
CHRNA3P32297 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CHRNA3P32297 AC008687.5-201ENST00000593746 558 ntBASIC18.63■□□□□ 0.57
CHRNA3P32297 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA3P32297 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA3P32297 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA3P32297 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA3P32297 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.63■□□□□ 0.57
CHRNA3P32297 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA3P32297 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.63■□□□□ 0.57
CHRNA3P32297 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.63■□□□□ 0.57
CHRNA3P32297 AC084018.2-201ENST00000613093 2607 ntBASIC18.63■□□□□ 0.57
CHRNA3P32297 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.63■□□□□ 0.57
CHRNA3P32297 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA3P32297 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA3P32297 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA3P32297 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHRNA3P32297 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHRNA3P32297 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CHRNA3P32297 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.62■□□□□ 0.57
CHRNA3P32297 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
CHRNA3P32297 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHRNA3P32297 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.62■□□□□ 0.57
CHRNA3P32297 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHRNA3P32297 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHRNA3P32297 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHRNA3P32297 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CHRNA3P32297 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CHRNA3P32297 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
CHRNA3P32297 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.62■□□□□ 0.57
CHRNA3P32297 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
CHRNA3P32297 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.62■□□□□ 0.57
CHRNA3P32297 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.62■□□□□ 0.57
CHRNA3P32297 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.62■□□□□ 0.57
CHRNA3P32297 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CHRNA3P32297 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHRNA3P32297 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.62■□□□□ 0.57
CHRNA3P32297 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHRNA3P32297 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHRNA3P32297 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHRNA3P32297 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms