Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
RFX1P22670 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX1P22670 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
RFX1P22670 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX1P22670 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX1P22670 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX1P22670 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX1P22670 KRT18P13-201ENST00000400056 1290 ntBASIC19.26■□□□□ 0.67
RFX1P22670 TSPY12P-201ENST00000421279 868 ntBASIC19.26■□□□□ 0.67
RFX1P22670 DRAXINP1-201ENST00000437611 948 ntBASIC19.26■□□□□ 0.67
RFX1P22670 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.26■□□□□ 0.67
RFX1P22670 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.26■□□□□ 0.67
RFX1P22670 AC117500.6-201ENST00000624871 588 ntBASIC19.26■□□□□ 0.67
RFX1P22670 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
RFX1P22670 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.26■□□□□ 0.67
RFX1P22670 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.26■□□□□ 0.67
RFX1P22670 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
RFX1P22670 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX1P22670 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RFX1P22670 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX1P22670 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RFX1P22670 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX1P22670 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFX1P22670 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX1P22670 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX1P22670 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX1P22670 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX1P22670 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC19.25■□□□□ 0.67
RFX1P22670 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX1P22670 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX1P22670 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX1P22670 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX1P22670 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFX1P22670 AL355312.1-201ENST00000407115 2176 ntBASIC19.25■□□□□ 0.67
RFX1P22670 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.25■□□□□ 0.67
RFX1P22670 AL138688.1-201ENST00000624851 1594 ntBASIC19.25■□□□□ 0.67
RFX1P22670 KRT8P47-201ENST00000604727 1398 ntBASIC19.25■□□□□ 0.67
RFX1P22670 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
RFX1P22670 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX1P22670 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.25■□□□□ 0.67
RFX1P22670 AP003733.1-201ENST00000491725 852 ntBASIC19.25■□□□□ 0.67
RFX1P22670 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.25■□□□□ 0.67
RFX1P22670 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC19.25■□□□□ 0.67
RFX1P22670 AC074051.2-201ENST00000565115 352 ntBASIC19.25■□□□□ 0.67
RFX1P22670 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.25■□□□□ 0.67
RFX1P22670 LINC01451-201ENST00000623792 534 ntBASIC19.25■□□□□ 0.67
RFX1P22670 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.25■□□□□ 0.67
RFX1P22670 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
RFX1P22670 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
RFX1P22670 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX1P22670 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX1P22670 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
RFX1P22670 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX1P22670 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
RFX1P22670 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC19.25■□□□□ 0.67
RFX1P22670 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX1P22670 LINC00304-203ENST00000565008 1864 ntBASIC19.24■□□□□ 0.67
RFX1P22670 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.24■□□□□ 0.67
RFX1P22670 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX1P22670 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX1P22670 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX1P22670 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RFX1P22670 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RFX1P22670 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX1P22670 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.24■□□□□ 0.67
RFX1P22670 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RFX1P22670 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RFX1P22670 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
RFX1P22670 AL590627.1-203ENST00000421194 1026 ntBASIC19.24■□□□□ 0.67
RFX1P22670 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC19.24■□□□□ 0.67
RFX1P22670 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX1P22670 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
RFX1P22670 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.24■□□□□ 0.67
RFX1P22670 SLC25A6P4-201ENST00000586535 553 ntBASIC19.24■□□□□ 0.67
RFX1P22670 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
RFX1P22670 CALM3-211ENST00000598871 561 ntTSL 4 BASIC19.24■□□□□ 0.67
RFX1P22670 GPR32P1-201ENST00000601788 811 ntBASIC19.24■□□□□ 0.67
RFX1P22670 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.24■□□□□ 0.67
RFX1P22670 AL121912.1-201ENST00000603683 238 ntBASIC19.24■□□□□ 0.67
RFX1P22670 HLA-J-201ENST00000462773 1622 ntBASIC19.24■□□□□ 0.67
RFX1P22670 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX1P22670 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.24■□□□□ 0.67
RFX1P22670 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
RFX1P22670 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
RFX1P22670 HR-201ENST00000312841 5351 ntTSL 5 BASIC19.24■□□□□ 0.67
RFX1P22670 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX1P22670 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.23■□□□□ 0.67
RFX1P22670 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RFX1P22670 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX1P22670 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX1P22670 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RFX1P22670 AC009949.1-201ENST00000623048 1830 ntBASIC19.23■□□□□ 0.67
RFX1P22670 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
RFX1P22670 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
RFX1P22670 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RFX1P22670 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RFX1P22670 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX1P22670 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX1P22670 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.23■□□□□ 0.67
RFX1P22670 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms