Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC1P18827 AC096633.1-201ENST00000422446 749 ntBASIC16.84■□□□□ 0.29
SDC1P18827 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.84■□□□□ 0.29
SDC1P18827 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC1P18827 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SDC1P18827 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.84■□□□□ 0.29
SDC1P18827 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC16.84■□□□□ 0.29
SDC1P18827 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.84■□□□□ 0.29
SDC1P18827 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.84■□□□□ 0.29
SDC1P18827 AC083849.1-201ENST00000615227 514 ntBASIC16.84■□□□□ 0.29
SDC1P18827 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.84■□□□□ 0.29
SDC1P18827 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SDC1P18827 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC1P18827 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SDC1P18827 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SDC1P18827 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC1P18827 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC1P18827 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC1P18827 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC1P18827 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC1P18827 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.84■□□□□ 0.29
SDC1P18827 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.84■□□□□ 0.29
SDC1P18827 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC1P18827 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SDC1P18827 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC1P18827 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC1P18827 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.84■□□□□ 0.29
SDC1P18827 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SDC1P18827 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.84■□□□□ 0.29
SDC1P18827 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC1P18827 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.84■□□□□ 0.29
SDC1P18827 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC1P18827 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
SDC1P18827 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.29
SDC1P18827 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
SDC1P18827 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SDC1P18827 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SDC1P18827 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
SDC1P18827 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC1P18827 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.83■□□□□ 0.28
SDC1P18827 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
SDC1P18827 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC1P18827 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SDC1P18827 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SDC1P18827 AC104076.2-201ENST00000448912 469 ntBASIC16.83■□□□□ 0.28
SDC1P18827 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC1P18827 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.83■□□□□ 0.28
SDC1P18827 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SDC1P18827 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.83■□□□□ 0.28
SDC1P18827 PPOX-219ENST00000544598 813 ntTSL 2 BASIC16.83■□□□□ 0.28
SDC1P18827 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC1P18827 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.83■□□□□ 0.28
SDC1P18827 LINC01023-201ENST00000606054 436 ntBASIC16.83■□□□□ 0.28
SDC1P18827 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.83■□□□□ 0.28
SDC1P18827 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC1P18827 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.83■□□□□ 0.28
SDC1P18827 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SDC1P18827 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC1P18827 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.83■□□□□ 0.28
SDC1P18827 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.82■□□□□ 0.28
SDC1P18827 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC1P18827 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC1P18827 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
SDC1P18827 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.82■□□□□ 0.28
SDC1P18827 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC1P18827 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.82■□□□□ 0.28
SDC1P18827 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC1P18827 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC1P18827 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
SDC1P18827 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC1P18827 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SDC1P18827 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.82■□□□□ 0.28
SDC1P18827 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
SDC1P18827 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.82■□□□□ 0.28
SDC1P18827 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SDC1P18827 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SDC1P18827 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC1P18827 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.82■□□□□ 0.28
SDC1P18827 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.82■□□□□ 0.28
SDC1P18827 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.82■□□□□ 0.28
SDC1P18827 AC063952.2-201ENST00000498792 1227 ntBASIC16.82■□□□□ 0.28
SDC1P18827 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SDC1P18827 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SDC1P18827 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC16.82■□□□□ 0.28
SDC1P18827 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC16.82■□□□□ 0.28
SDC1P18827 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.82■□□□□ 0.28
SDC1P18827 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.82■□□□□ 0.28
SDC1P18827 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC1P18827 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SDC1P18827 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SDC1P18827 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC1P18827 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC1P18827 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC1P18827 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SDC1P18827 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC1P18827 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC1P18827 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC1P18827 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC1P18827 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.82■□□□□ 0.28
SDC1P18827 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms