Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
COL3A1P02461 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL3A1P02461 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC23.21■■□□□ 1.31
COL3A1P02461 AC134043.2-201ENST00000624206 2238 ntBASIC23.21■■□□□ 1.31
COL3A1P02461 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL3A1P02461 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
COL3A1P02461 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC23.21■■□□□ 1.31
COL3A1P02461 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC23.21■■□□□ 1.31
COL3A1P02461 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC23.21■■□□□ 1.31
COL3A1P02461 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL3A1P02461 AC108073.2-201ENST00000464002 357 ntBASIC23.21■■□□□ 1.31
COL3A1P02461 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC23.21■■□□□ 1.31
COL3A1P02461 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC23.21■■□□□ 1.31
COL3A1P02461 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC23.21■■□□□ 1.31
COL3A1P02461 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC23.21■■□□□ 1.31
COL3A1P02461 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
COL3A1P02461 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL3A1P02461 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC23.21■■□□□ 1.31
COL3A1P02461 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL3A1P02461 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
COL3A1P02461 AL590787.1-201ENST00000568856 1315 ntBASIC23.21■■□□□ 1.31
COL3A1P02461 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
COL3A1P02461 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL3A1P02461 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC23.21■■□□□ 1.31
COL3A1P02461 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
COL3A1P02461 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC23.2■■□□□ 1.31
COL3A1P02461 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.31
COL3A1P02461 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
COL3A1P02461 AC104109.2-201ENST00000602919 1418 ntBASIC23.2■■□□□ 1.3
COL3A1P02461 AC007613.1-201ENST00000572811 2597 ntBASIC23.2■■□□□ 1.3
COL3A1P02461 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC23.2■■□□□ 1.3
COL3A1P02461 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC23.2■■□□□ 1.3
COL3A1P02461 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC23.2■■□□□ 1.3
COL3A1P02461 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL3A1P02461 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL3A1P02461 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC23.2■■□□□ 1.3
COL3A1P02461 AC093909.1-201ENST00000504731 1122 ntBASIC23.2■■□□□ 1.3
COL3A1P02461 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL3A1P02461 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC23.2■■□□□ 1.3
COL3A1P02461 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC23.2■■□□□ 1.3
COL3A1P02461 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC23.2■■□□□ 1.3
COL3A1P02461 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC23.2■■□□□ 1.3
COL3A1P02461 AC097637.2-201ENST00000624096 1997 ntBASIC23.2■■□□□ 1.3
COL3A1P02461 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL3A1P02461 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
COL3A1P02461 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
COL3A1P02461 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC23.19■■□□□ 1.3
COL3A1P02461 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
COL3A1P02461 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC23.19■■□□□ 1.3
COL3A1P02461 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC23.19■■□□□ 1.3
COL3A1P02461 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC23.19■■□□□ 1.3
COL3A1P02461 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC23.19■■□□□ 1.3
COL3A1P02461 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC23.19■■□□□ 1.3
COL3A1P02461 GNAS-203ENST00000306120 1878 ntBASIC23.19■■□□□ 1.3
COL3A1P02461 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
COL3A1P02461 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
COL3A1P02461 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC23.19■■□□□ 1.3
COL3A1P02461 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
COL3A1P02461 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL3A1P02461 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL3A1P02461 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL3A1P02461 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC23.18■■□□□ 1.3
COL3A1P02461 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL3A1P02461 PMS2P1-201ENST00000431037 1228 ntBASIC23.18■■□□□ 1.3
COL3A1P02461 RPL13AP23-201ENST00000480739 586 ntBASIC23.18■■□□□ 1.3
COL3A1P02461 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL3A1P02461 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL3A1P02461 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC23.18■■□□□ 1.3
COL3A1P02461 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL3A1P02461 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL3A1P02461 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL3A1P02461 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL3A1P02461 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL3A1P02461 AC067852.2-201ENST00000590513 2313 ntBASIC23.18■■□□□ 1.3
COL3A1P02461 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL3A1P02461 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL3A1P02461 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL3A1P02461 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL3A1P02461 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL3A1P02461 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL3A1P02461 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
COL3A1P02461 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC23.17■■□□□ 1.3
COL3A1P02461 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC23.17■■□□□ 1.3
COL3A1P02461 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
COL3A1P02461 AC108751.1-201ENST00000490852 363 ntBASIC23.17■■□□□ 1.3
COL3A1P02461 RPS15P9-201ENST00000494093 319 ntBASIC23.17■■□□□ 1.3
COL3A1P02461 PGAM5P1-201ENST00000518923 814 ntBASIC23.17■■□□□ 1.3
COL3A1P02461 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC23.17■■□□□ 1.3
COL3A1P02461 PIN1-206ENST00000587625 878 ntTSL 2 BASIC23.17■■□□□ 1.3
COL3A1P02461 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
COL3A1P02461 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC23.17■■□□□ 1.3
COL3A1P02461 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC23.17■■□□□ 1.3
COL3A1P02461 BOC-212ENST00000485230 2173 ntTSL 2 BASIC23.17■■□□□ 1.3
COL3A1P02461 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL3A1P02461 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL3A1P02461 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
COL3A1P02461 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL3A1P02461 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL3A1P02461 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL3A1P02461 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC23.17■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms