Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 AP000344.2-201ENST00000512987 629 ntBASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 AL049757.1-201ENST00000616842 1596 ntBASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 AC132938.5-201ENST00000624980 1813 ntBASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 KLF4P1-201ENST00000412782 1185 ntBASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 GGTLC5P-201ENST00000617623 998 ntBASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC16.93■□□□□ 0.3
PCDHGA1Q9Y5H4 AC020763.4-201ENST00000623414 4170 ntBASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms