Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 AC211486.1-202ENST00000416371 468 ntBASIC20.68■□□□□ 0.9
TRIM47Q96LD4 AP006288.1-201ENST00000446065 395 ntBASIC20.68■□□□□ 0.9
TRIM47Q96LD4 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 AC211476.1-201ENST00000503899 468 ntBASIC20.68■□□□□ 0.9
TRIM47Q96LD4 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 MIR3197-201ENST00000582241 73 ntBASIC20.68■□□□□ 0.9
TRIM47Q96LD4 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 MTDHP5-201ENST00000598980 586 ntBASIC20.68■□□□□ 0.9
TRIM47Q96LD4 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 HTR7P1-202ENST00000624664 4411 ntBASIC20.68■□□□□ 0.9
TRIM47Q96LD4 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM47Q96LD4 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM47Q96LD4 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 BEX3-201ENST00000361298 921 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.66■□□□□ 0.9
TRIM47Q96LD4 METTL21AP1-201ENST00000438852 635 ntBASIC20.66■□□□□ 0.9
TRIM47Q96LD4 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 AL596442.2-201ENST00000610240 980 ntBASIC20.66■□□□□ 0.9
TRIM47Q96LD4 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 AC009102.3-201ENST00000623118 1491 ntBASIC20.66■□□□□ 0.9
TRIM47Q96LD4 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM47Q96LD4 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM47Q96LD4 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM47Q96LD4 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM47Q96LD4 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM47Q96LD4 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM47Q96LD4 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM47Q96LD4 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM47Q96LD4 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM47Q96LD4 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM47Q96LD4 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms