Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CHFRQ96EP1 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.95■□□□□ 0.46
CHFRQ96EP1 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
CHFRQ96EP1 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.95■□□□□ 0.46
CHFRQ96EP1 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHFRQ96EP1 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CHFRQ96EP1 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CHFRQ96EP1 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CHFRQ96EP1 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHFRQ96EP1 WIZP1-201ENST00000531444 2299 ntBASIC17.95■□□□□ 0.46
CHFRQ96EP1 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHFRQ96EP1 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHFRQ96EP1 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHFRQ96EP1 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CHFRQ96EP1 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 AC009949.1-201ENST00000623048 1830 ntBASIC17.94■□□□□ 0.46
CHFRQ96EP1 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHFRQ96EP1 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHFRQ96EP1 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHFRQ96EP1 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 CRYGEP-201ENST00000412192 528 ntBASIC17.94■□□□□ 0.46
CHFRQ96EP1 IGLL3P-201ENST00000412472 434 ntBASIC17.94■□□□□ 0.46
CHFRQ96EP1 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 MIR4751-201ENST00000578027 74 ntBASIC17.94■□□□□ 0.46
CHFRQ96EP1 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 AC079781.4-201ENST00000641908 219 ntBASIC17.94■□□□□ 0.46
CHFRQ96EP1 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CHFRQ96EP1 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CHFRQ96EP1 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHFRQ96EP1 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CHFRQ96EP1 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.94■□□□□ 0.46
CHFRQ96EP1 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.93■□□□□ 0.46
CHFRQ96EP1 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.93■□□□□ 0.46
CHFRQ96EP1 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CHFRQ96EP1 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
CHFRQ96EP1 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.93■□□□□ 0.46
CHFRQ96EP1 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CHFRQ96EP1 AC211486.1-202ENST00000416371 468 ntBASIC17.93■□□□□ 0.46
CHFRQ96EP1 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.93■□□□□ 0.46
CHFRQ96EP1 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.93■□□□□ 0.46
CHFRQ96EP1 VN2R19P-201ENST00000442399 1052 ntBASIC17.93■□□□□ 0.46
CHFRQ96EP1 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.93■□□□□ 0.46
CHFRQ96EP1 AC211476.1-201ENST00000503899 468 ntBASIC17.93■□□□□ 0.46
CHFRQ96EP1 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.93■□□□□ 0.46
CHFRQ96EP1 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 STK25P1-201ENST00000585406 838 ntBASIC17.93■□□□□ 0.46
CHFRQ96EP1 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CHFRQ96EP1 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.93■□□□□ 0.46
CHFRQ96EP1 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.93■□□□□ 0.46
CHFRQ96EP1 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHFRQ96EP1 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHFRQ96EP1 AC002310.6-201ENST00000624451 1377 ntBASIC17.92■□□□□ 0.46
CHFRQ96EP1 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CHFRQ96EP1 AC004408.2-201ENST00000623613 2777 ntBASIC17.92■□□□□ 0.46
CHFRQ96EP1 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
CHFRQ96EP1 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CHFRQ96EP1 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHFRQ96EP1 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.92■□□□□ 0.46
CHFRQ96EP1 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.92■□□□□ 0.46
CHFRQ96EP1 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.92■□□□□ 0.46
CHFRQ96EP1 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CHFRQ96EP1 AC003669.1-201ENST00000334569 611 ntBASIC17.92■□□□□ 0.46
CHFRQ96EP1 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHFRQ96EP1 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms