Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 KRT18P65-201ENST00000439811 1286 ntBASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 FDX1P1-201ENST00000449115 551 ntBASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 AL160237.2-201ENST00000556165 472 ntBASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 AL121912.1-201ENST00000603683 238 ntBASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP3Q96DZ5 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
CLIP3Q96DZ5 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
CLIP3Q96DZ5 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLIP3Q96DZ5 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLIP3Q96DZ5 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLIP3Q96DZ5 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.08■□□□□ 0.33
CLIP3Q96DZ5 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLIP3Q96DZ5 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLIP3Q96DZ5 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.08■□□□□ 0.33
CLIP3Q96DZ5 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
CLIP3Q96DZ5 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLIP3Q96DZ5 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 SAPCD2P3-201ENST00000455031 850 ntBASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 MIR5100-201ENST00000579544 119 ntBASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 ESPNP-201ENST00000270691 2015 ntBASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
CLIP3Q96DZ5 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms