Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 KRT18P48-201ENST00000434763 852 ntBASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 ATP5G1P1-201ENST00000448724 379 ntBASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 AC009154.2-201ENST00000621177 724 ntBASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 TSPY12P-201ENST00000421279 868 ntBASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 LIN28AP1-201ENST00000429574 405 ntBASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 AC112698.1-201ENST00000510299 916 ntBASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 AC139887.4-201ENST00000607877 719 ntBASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
ATG4AQ8WYN0 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
ATG4AQ8WYN0 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
ATG4AQ8WYN0 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ATG4AQ8WYN0 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.33■□□□□ 0.53
ATG4AQ8WYN0 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
ATG4AQ8WYN0 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
ATG4AQ8WYN0 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
ATG4AQ8WYN0 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ATG4AQ8WYN0 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 LYSMD4-203ENST00000378904 2122 ntBASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 AC124067.4-201ENST00000519691 2379 ntBASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4AQ8WYN0 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms