Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM3Q8TF72 AC141586.5-201ENST00000624546 2050 ntBASIC18.02■□□□□ 0.48
SHROOM3Q8TF72 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
SHROOM3Q8TF72 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM3Q8TF72 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
SHROOM3Q8TF72 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM3Q8TF72 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHROOM3Q8TF72 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHROOM3Q8TF72 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
SHROOM3Q8TF72 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.02■□□□□ 0.47
SHROOM3Q8TF72 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.02■□□□□ 0.47
SHROOM3Q8TF72 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
SHROOM3Q8TF72 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHROOM3Q8TF72 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SHROOM3Q8TF72 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
SHROOM3Q8TF72 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHROOM3Q8TF72 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 AC148477.5-201ENST00000625164 1645 ntBASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 NUS1P2-201ENST00000417358 873 ntBASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 CROCCP2-202ENST00000412962 2773 ntBASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.01■□□□□ 0.47
SHROOM3Q8TF72 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18■□□□□ 0.47
SHROOM3Q8TF72 AL160237.2-201ENST00000556165 472 ntBASIC18■□□□□ 0.47
SHROOM3Q8TF72 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHROOM3Q8TF72 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18■□□□□ 0.47
SHROOM3Q8TF72 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM3Q8TF72 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18■□□□□ 0.47
SHROOM3Q8TF72 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
SHROOM3Q8TF72 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18■□□□□ 0.47
SHROOM3Q8TF72 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHROOM3Q8TF72 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18■□□□□ 0.47
SHROOM3Q8TF72 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM3Q8TF72 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
SHROOM3Q8TF72 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHROOM3Q8TF72 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18■□□□□ 0.47
SHROOM3Q8TF72 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM3Q8TF72 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM3Q8TF72 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18■□□□□ 0.47
SHROOM3Q8TF72 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM3Q8TF72 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHROOM3Q8TF72 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SHROOM3Q8TF72 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM3Q8TF72 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18■□□□□ 0.47
SHROOM3Q8TF72 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
SHROOM3Q8TF72 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
SHROOM3Q8TF72 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18■□□□□ 0.47
SHROOM3Q8TF72 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 SLC25A1P3-201ENST00000395415 828 ntBASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM3Q8TF72 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.98■□□□□ 0.47
SHROOM3Q8TF72 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.98■□□□□ 0.47
SHROOM3Q8TF72 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM3Q8TF72 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.98■□□□□ 0.47
SHROOM3Q8TF72 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
SHROOM3Q8TF72 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.98■□□□□ 0.47
SHROOM3Q8TF72 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms