Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 BX276092.7-203ENST00000637198 1536 ntBASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 AC009336.1-201ENST00000608941 1553 ntBASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USHBP1Q8N6Y0 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
USHBP1Q8N6Y0 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
USHBP1Q8N6Y0 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC23.2■■□□□ 1.3
USHBP1Q8N6Y0 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USHBP1Q8N6Y0 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
USHBP1Q8N6Y0 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USHBP1Q8N6Y0 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USHBP1Q8N6Y0 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC23.2■■□□□ 1.3
USHBP1Q8N6Y0 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USHBP1Q8N6Y0 LINC00982-205ENST00000420957 435 ntBASIC23.2■■□□□ 1.3
USHBP1Q8N6Y0 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC23.2■■□□□ 1.3
USHBP1Q8N6Y0 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC23.2■■□□□ 1.3
USHBP1Q8N6Y0 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC23.2■■□□□ 1.3
USHBP1Q8N6Y0 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 AC087289.5-201ENST00000586076 3175 ntBASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 PRSS29P-201ENST00000440800 595 ntBASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 AL353135.1-201ENST00000606729 504 ntBASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 STK4-201ENST00000372801 2038 ntTSL 2 BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC23.19■■□□□ 1.3
USHBP1Q8N6Y0 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 AC104581.1-202ENST00000635932 2618 ntBASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 RPS15-207ENST00000591032 550 ntTSL 3 BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 C20orf181-201ENST00000623918 480 ntBASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
USHBP1Q8N6Y0 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 TNXA-203ENST00000507684 2038 ntBASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 DDX43P3-201ENST00000441064 443 ntBASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 AC004877.2-201ENST00000623941 599 ntBASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC23.17■■□□□ 1.3
USHBP1Q8N6Y0 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USHBP1Q8N6Y0 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms