Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN1P58418 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC15.84■□□□□ 0.13
CLRN1P58418 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC15.84■□□□□ 0.13
CLRN1P58418 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
CLRN1P58418 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN1P58418 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC15.84■□□□□ 0.13
CLRN1P58418 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.84■□□□□ 0.13
CLRN1P58418 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN1P58418 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN1P58418 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN1P58418 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN1P58418 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN1P58418 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC15.84■□□□□ 0.13
CLRN1P58418 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN1P58418 TSPY22P-201ENST00000427496 604 ntBASIC15.84■□□□□ 0.13
CLRN1P58418 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN1P58418 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN1P58418 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC15.84■□□□□ 0.13
CLRN1P58418 AC068472.1-201ENST00000474589 881 ntBASIC15.84■□□□□ 0.13
CLRN1P58418 NME3-204ENST00000563498 920 ntTSL 2 BASIC15.84■□□□□ 0.13
CLRN1P58418 NTF6B-201ENST00000591913 560 ntBASIC15.84■□□□□ 0.13
CLRN1P58418 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN1P58418 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC15.84■□□□□ 0.13
CLRN1P58418 AL355312.1-201ENST00000407115 2176 ntBASIC15.84■□□□□ 0.13
CLRN1P58418 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
CLRN1P58418 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC15.84■□□□□ 0.13
CLRN1P58418 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN1P58418 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN1P58418 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
CLRN1P58418 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN1P58418 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN1P58418 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN1P58418 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
CLRN1P58418 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN1P58418 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN1P58418 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN1P58418 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
CLRN1P58418 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CLRN1P58418 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
CLRN1P58418 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC15.83■□□□□ 0.13
CLRN1P58418 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CLRN1P58418 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC15.83■□□□□ 0.13
CLRN1P58418 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
CLRN1P58418 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC15.83■□□□□ 0.12
CLRN1P58418 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLRN1P58418 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CLRN1P58418 EML3-217ENST00000531557 2509 ntTSL 5 BASIC15.83■□□□□ 0.12
CLRN1P58418 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLRN1P58418 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLRN1P58418 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC15.83■□□□□ 0.12
CLRN1P58418 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CLRN1P58418 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CLRN1P58418 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC15.83■□□□□ 0.12
CLRN1P58418 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CLRN1P58418 CD320-202ENST00000537716 1119 ntTSL 2 BASIC15.83■□□□□ 0.12
CLRN1P58418 AL136038.3-201ENST00000561909 1096 ntBASIC15.83■□□□□ 0.12
CLRN1P58418 NDUFV2-AS1-203ENST00000608008 779 ntBASIC15.83■□□□□ 0.12
CLRN1P58418 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC15.83■□□□□ 0.12
CLRN1P58418 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CLRN1P58418 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
CLRN1P58418 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
CLRN1P58418 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLRN1P58418 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLRN1P58418 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC15.83■□□□□ 0.12
CLRN1P58418 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC15.82■□□□□ 0.12
CLRN1P58418 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC15.82■□□□□ 0.12
CLRN1P58418 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CLRN1P58418 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
CLRN1P58418 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC15.82■□□□□ 0.12
CLRN1P58418 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC15.82■□□□□ 0.12
CLRN1P58418 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC15.82■□□□□ 0.12
CLRN1P58418 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC15.82■□□□□ 0.12
CLRN1P58418 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC15.82■□□□□ 0.12
CLRN1P58418 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CLRN1P58418 AC087388.1-201ENST00000571370 1112 ntBASIC15.82■□□□□ 0.12
CLRN1P58418 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC15.82■□□□□ 0.12
CLRN1P58418 AC011498.5-201ENST00000592027 486 ntBASIC15.82■□□□□ 0.12
CLRN1P58418 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 AL590326.2-201ENST00000625139 305 ntBASIC15.82■□□□□ 0.12
CLRN1P58418 AL121956.5-201ENST00000625261 221 ntBASIC15.82■□□□□ 0.12
CLRN1P58418 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CLRN1P58418 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms