Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 IRX1P1-201ENST00000438849 1838 ntBASIC17.46■□□□□ 0.39
LIMK1P53667 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.46■□□□□ 0.39
LIMK1P53667 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
LIMK1P53667 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMK1P53667 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
LIMK1P53667 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
LIMK1P53667 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMK1P53667 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.46■□□□□ 0.38
LIMK1P53667 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
LIMK1P53667 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
LIMK1P53667 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.45■□□□□ 0.38
LIMK1P53667 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMK1P53667 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIMK1P53667 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMK1P53667 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.45■□□□□ 0.38
LIMK1P53667 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIMK1P53667 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMK1P53667 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIMK1P53667 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMK1P53667 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMK1P53667 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.45■□□□□ 0.38
LIMK1P53667 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMK1P53667 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
LIMK1P53667 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMK1P53667 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMK1P53667 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.45■□□□□ 0.38
LIMK1P53667 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.45■□□□□ 0.38
LIMK1P53667 KRT18P65-201ENST00000439811 1286 ntBASIC17.45■□□□□ 0.38
LIMK1P53667 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMK1P53667 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.45■□□□□ 0.38
LIMK1P53667 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMK1P53667 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMK1P53667 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.45■□□□□ 0.38
LIMK1P53667 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMK1P53667 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIMK1P53667 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIMK1P53667 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMK1P53667 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMK1P53667 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIMK1P53667 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIMK1P53667 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIMK1P53667 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMK1P53667 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMK1P53667 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMK1P53667 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMK1P53667 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMK1P53667 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMK1P53667 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.44■□□□□ 0.38
LIMK1P53667 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMK1P53667 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.44■□□□□ 0.38
LIMK1P53667 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMK1P53667 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMK1P53667 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIMK1P53667 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIMK1P53667 VN2R19P-201ENST00000442399 1052 ntBASIC17.44■□□□□ 0.38
LIMK1P53667 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.44■□□□□ 0.38
LIMK1P53667 ACTG1P14-201ENST00000446382 1122 ntBASIC17.44■□□□□ 0.38
LIMK1P53667 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIMK1P53667 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.44■□□□□ 0.38
LIMK1P53667 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.44■□□□□ 0.38
LIMK1P53667 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
LIMK1P53667 PUDP-206ENST00000540122 825 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMK1P53667 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
LIMK1P53667 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
LIMK1P53667 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.44■□□□□ 0.38
LIMK1P53667 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIMK1P53667 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.44■□□□□ 0.38
LIMK1P53667 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.44■□□□□ 0.38
LIMK1P53667 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMK1P53667 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMK1P53667 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMK1P53667 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LIMK1P53667 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMK1P53667 FP475955.4-201ENST00000623131 1990 ntBASIC17.44■□□□□ 0.38
LIMK1P53667 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMK1P53667 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMK1P53667 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMK1P53667 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
LIMK1P53667 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.43■□□□□ 0.38
LIMK1P53667 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
LIMK1P53667 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
LIMK1P53667 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
LIMK1P53667 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.43■□□□□ 0.38
LIMK1P53667 HEIH-201ENST00000623091 1652 ntBASIC17.43■□□□□ 0.38
LIMK1P53667 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.43■□□□□ 0.38
LIMK1P53667 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.43■□□□□ 0.38
LIMK1P53667 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 HCG4B-203ENST00000450128 991 ntBASIC17.43■□□□□ 0.38
LIMK1P53667 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC17.43■□□□□ 0.38
LIMK1P53667 HLA-J-202ENST00000469281 1241 ntBASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms