Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
SOX3P41225 REXO1L9P-201ENST00000604264 2108 ntBASIC16.68■□□□□ 0.26
SOX3P41225 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.68■□□□□ 0.26
SOX3P41225 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.68■□□□□ 0.26
SOX3P41225 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
SOX3P41225 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
SOX3P41225 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.68■□□□□ 0.26
SOX3P41225 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
SOX3P41225 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
SOX3P41225 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.68■□□□□ 0.26
SOX3P41225 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.68■□□□□ 0.26
SOX3P41225 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
SOX3P41225 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.68■□□□□ 0.26
SOX3P41225 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SOX3P41225 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SOX3P41225 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SOX3P41225 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SOX3P41225 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
SOX3P41225 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SOX3P41225 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SOX3P41225 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SOX3P41225 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SOX3P41225 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.67■□□□□ 0.26
SOX3P41225 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SOX3P41225 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.67■□□□□ 0.26
SOX3P41225 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SOX3P41225 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SOX3P41225 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SOX3P41225 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.67■□□□□ 0.26
SOX3P41225 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SOX3P41225 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.67■□□□□ 0.26
SOX3P41225 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.67■□□□□ 0.26
SOX3P41225 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SOX3P41225 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SOX3P41225 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SOX3P41225 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.67■□□□□ 0.26
SOX3P41225 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.67■□□□□ 0.26
SOX3P41225 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.67■□□□□ 0.26
SOX3P41225 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SOX3P41225 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SOX3P41225 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SOX3P41225 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SOX3P41225 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SOX3P41225 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
SOX3P41225 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SOX3P41225 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.66■□□□□ 0.26
SOX3P41225 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SOX3P41225 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SOX3P41225 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SOX3P41225 AC233702.3-201ENST00000578656 1387 ntBASIC16.66■□□□□ 0.26
SOX3P41225 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
SOX3P41225 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SOX3P41225 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.66■□□□□ 0.26
SOX3P41225 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
SOX3P41225 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SOX3P41225 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SOX3P41225 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
SOX3P41225 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
SOX3P41225 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SOX3P41225 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.66■□□□□ 0.26
SOX3P41225 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.66■□□□□ 0.26
SOX3P41225 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SOX3P41225 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SOX3P41225 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.66■□□□□ 0.26
SOX3P41225 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.66■□□□□ 0.26
SOX3P41225 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.66■□□□□ 0.26
SOX3P41225 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.66■□□□□ 0.26
SOX3P41225 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SOX3P41225 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SOX3P41225 PRELID1P1-202ENST00000567272 903 ntBASIC16.66■□□□□ 0.26
SOX3P41225 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.66■□□□□ 0.26
SOX3P41225 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
SOX3P41225 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
SOX3P41225 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SOX3P41225 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SOX3P41225 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
SOX3P41225 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.65■□□□□ 0.26
SOX3P41225 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
SOX3P41225 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX3P41225 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX3P41225 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX3P41225 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX3P41225 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX3P41225 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX3P41225 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms