Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 GGTLC5P-201ENST00000617623 998 ntBASIC18.35■□□□□ 0.53
HOXA9P31269 AC004790.2-201ENST00000623588 572 ntBASIC18.35■□□□□ 0.53
HOXA9P31269 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXA9P31269 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXA9P31269 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.35■□□□□ 0.53
HOXA9P31269 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXA9P31269 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HOXA9P31269 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.35■□□□□ 0.53
HOXA9P31269 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.34■□□□□ 0.53
HOXA9P31269 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
HOXA9P31269 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXA9P31269 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXA9P31269 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.34■□□□□ 0.53
HOXA9P31269 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXA9P31269 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXA9P31269 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
HOXA9P31269 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXA9P31269 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.34■□□□□ 0.53
HOXA9P31269 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXA9P31269 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HOXA9P31269 MRPL20P1-201ENST00000400819 433 ntBASIC18.34■□□□□ 0.53
HOXA9P31269 AC254562.1-201ENST00000417586 456 ntBASIC18.34■□□□□ 0.53
HOXA9P31269 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.34■□□□□ 0.53
HOXA9P31269 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.34■□□□□ 0.53
HOXA9P31269 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.34■□□□□ 0.53
HOXA9P31269 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.34■□□□□ 0.53
HOXA9P31269 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.34■□□□□ 0.53
HOXA9P31269 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
HOXA9P31269 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HOXA9P31269 AL353135.1-201ENST00000606729 504 ntBASIC18.34■□□□□ 0.53
HOXA9P31269 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.34■□□□□ 0.53
HOXA9P31269 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
HOXA9P31269 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXA9P31269 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXA9P31269 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXA9P31269 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.34■□□□□ 0.53
HOXA9P31269 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HOXA9P31269 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HOXA9P31269 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
HOXA9P31269 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXA9P31269 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.33■□□□□ 0.53
HOXA9P31269 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.33■□□□□ 0.53
HOXA9P31269 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.33■□□□□ 0.53
HOXA9P31269 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HOXA9P31269 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HOXA9P31269 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HOXA9P31269 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HOXA9P31269 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
HOXA9P31269 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HOXA9P31269 AC009949.1-201ENST00000623048 1830 ntBASIC18.33■□□□□ 0.53
HOXA9P31269 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
HOXA9P31269 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HOXA9P31269 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HOXA9P31269 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
HOXA9P31269 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC18.33■□□□□ 0.52
HOXA9P31269 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.52
HOXA9P31269 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
HOXA9P31269 AL355385.1-201ENST00000606123 409 ntBASIC18.33■□□□□ 0.52
HOXA9P31269 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.33■□□□□ 0.52
HOXA9P31269 AC092865.6-201ENST00000642101 219 ntBASIC18.33■□□□□ 0.52
HOXA9P31269 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.33■□□□□ 0.52
HOXA9P31269 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HOXA9P31269 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HOXA9P31269 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HOXA9P31269 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HOXA9P31269 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HOXA9P31269 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.33■□□□□ 0.52
HOXA9P31269 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.33■□□□□ 0.52
HOXA9P31269 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.33■□□□□ 0.52
HOXA9P31269 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.33■□□□□ 0.52
HOXA9P31269 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HOXA9P31269 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXA9P31269 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.32■□□□□ 0.52
HOXA9P31269 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXA9P31269 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HOXA9P31269 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXA9P31269 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HOXA9P31269 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
HOXA9P31269 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXA9P31269 AC100803.2-201ENST00000562459 1963 ntBASIC18.32■□□□□ 0.52
HOXA9P31269 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HOXA9P31269 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HOXA9P31269 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXA9P31269 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXA9P31269 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HOXA9P31269 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
HOXA9P31269 IGLL3P-201ENST00000412472 434 ntBASIC18.32■□□□□ 0.52
HOXA9P31269 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC18.32■□□□□ 0.52
HOXA9P31269 ALG1L5P-201ENST00000482043 771 ntBASIC18.32■□□□□ 0.52
HOXA9P31269 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.32■□□□□ 0.52
HOXA9P31269 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.32■□□□□ 0.52
HOXA9P31269 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
HOXA9P31269 AC096734.2-201ENST00000562054 433 ntBASIC18.32■□□□□ 0.52
HOXA9P31269 MIR4469-201ENST00000583919 79 ntBASIC18.32■□□□□ 0.52
HOXA9P31269 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.32■□□□□ 0.52
HOXA9P31269 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC18.32■□□□□ 0.52
HOXA9P31269 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXA9P31269 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
HOXA9P31269 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXA9P31269 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms