Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
HLA-DMBP28068 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC13.52□□□□□ -0.25
HLA-DMBP28068 LINC01238-205ENST00000567549 1107 ntBASIC13.52□□□□□ -0.25
HLA-DMBP28068 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DMBP28068 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC13.52□□□□□ -0.25
HLA-DMBP28068 NTF6B-201ENST00000591913 560 ntBASIC13.52□□□□□ -0.25
HLA-DMBP28068 AC139887.4-201ENST00000607877 719 ntBASIC13.52□□□□□ -0.25
HLA-DMBP28068 AC141257.4-201ENST00000634557 245 ntBASIC13.52□□□□□ -0.25
HLA-DMBP28068 AC136944.6-201ENST00000634818 245 ntBASIC13.52□□□□□ -0.25
HLA-DMBP28068 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC13.52□□□□□ -0.25
HLA-DMBP28068 AC022898.2-201ENST00000616822 1312 ntBASIC13.52□□□□□ -0.25
HLA-DMBP28068 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DMBP28068 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC13.52□□□□□ -0.25
HLA-DMBP28068 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC13.52□□□□□ -0.25
HLA-DMBP28068 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DMBP28068 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DMBP28068 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC13.52□□□□□ -0.25
HLA-DMBP28068 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
HLA-DMBP28068 AC133963.1-201ENST00000504166 1679 ntBASIC13.52□□□□□ -0.25
HLA-DMBP28068 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.25
HLA-DMBP28068 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
HLA-DMBP28068 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
HLA-DMBP28068 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC13.52□□□□□ -0.25
HLA-DMBP28068 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC13.52□□□□□ -0.25
HLA-DMBP28068 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC13.52□□□□□ -0.25
HLA-DMBP28068 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC13.52□□□□□ -0.25
HLA-DMBP28068 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DMBP28068 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DMBP28068 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DMBP28068 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DMBP28068 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DMBP28068 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DMBP28068 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DMBP28068 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DMBP28068 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DMBP28068 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DMBP28068 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DMBP28068 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DMBP28068 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DMBP28068 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DMBP28068 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DMBP28068 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DMBP28068 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DMBP28068 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DMBP28068 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DMBP28068 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DMBP28068 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 COX11P1-201ENST00000489116 835 ntBASIC13.51□□□□□ -0.25
HLA-DMBP28068 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 AC087388.1-201ENST00000571370 1112 ntBASIC13.51□□□□□ -0.25
HLA-DMBP28068 AL138966.2-201ENST00000621997 464 ntBASIC13.51□□□□□ -0.25
HLA-DMBP28068 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DMBP28068 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DMBP28068 AP001094.4-201ENST00000579008 2176 ntBASIC13.51□□□□□ -0.25
HLA-DMBP28068 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HLA-DMBP28068 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
HLA-DMBP28068 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 LINC00304-203ENST00000565008 1864 ntBASIC13.5□□□□□ -0.25
HLA-DMBP28068 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms