Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL3A1P02461 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC23.26■■□□□ 1.31
COL3A1P02461 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC23.26■■□□□ 1.31
COL3A1P02461 AC068880.1-201ENST00000507289 2297 ntBASIC23.26■■□□□ 1.31
COL3A1P02461 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
COL3A1P02461 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL3A1P02461 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC23.26■■□□□ 1.31
COL3A1P02461 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL3A1P02461 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL3A1P02461 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
COL3A1P02461 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
COL3A1P02461 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC23.25■■□□□ 1.31
COL3A1P02461 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC23.25■■□□□ 1.31
COL3A1P02461 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL3A1P02461 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC23.25■■□□□ 1.31
COL3A1P02461 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC23.25■■□□□ 1.31
COL3A1P02461 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC23.25■■□□□ 1.31
COL3A1P02461 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC23.25■■□□□ 1.31
COL3A1P02461 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC23.25■■□□□ 1.31
COL3A1P02461 AC136632.2-201ENST00000512891 861 ntBASIC23.25■■□□□ 1.31
COL3A1P02461 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC23.25■■□□□ 1.31
COL3A1P02461 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL3A1P02461 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL3A1P02461 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL3A1P02461 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
COL3A1P02461 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC23.25■■□□□ 1.31
COL3A1P02461 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC23.25■■□□□ 1.31
COL3A1P02461 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL3A1P02461 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL3A1P02461 RNA5SP415-201ENST00000517246 115 ntBASIC23.24■■□□□ 1.31
COL3A1P02461 AC106730.1-201ENST00000566722 1090 ntBASIC23.24■■□□□ 1.31
COL3A1P02461 Z83851.2-201ENST00000609564 659 ntBASIC23.24■■□□□ 1.31
COL3A1P02461 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC23.24■■□□□ 1.31
COL3A1P02461 AF228730.7-201ENST00000641842 219 ntBASIC23.24■■□□□ 1.31
COL3A1P02461 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL3A1P02461 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL3A1P02461 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL3A1P02461 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL3A1P02461 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
COL3A1P02461 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
COL3A1P02461 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC23.24■■□□□ 1.31
COL3A1P02461 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC23.24■■□□□ 1.31
COL3A1P02461 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL3A1P02461 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL3A1P02461 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL3A1P02461 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
COL3A1P02461 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
COL3A1P02461 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL3A1P02461 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL3A1P02461 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL3A1P02461 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC23.24■■□□□ 1.31
COL3A1P02461 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
COL3A1P02461 LBH-204ENST00000406087 559 ntTSL 4 BASIC23.24■■□□□ 1.31
COL3A1P02461 LINC00982-205ENST00000420957 435 ntBASIC23.24■■□□□ 1.31
COL3A1P02461 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC23.24■■□□□ 1.31
COL3A1P02461 AC009947.1-201ENST00000444350 727 ntBASIC23.24■■□□□ 1.31
COL3A1P02461 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC23.24■■□□□ 1.31
COL3A1P02461 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC23.24■■□□□ 1.31
COL3A1P02461 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL3A1P02461 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL3A1P02461 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC23.24■■□□□ 1.31
COL3A1P02461 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC23.23■■□□□ 1.31
COL3A1P02461 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC23.23■■□□□ 1.31
COL3A1P02461 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC23.23■■□□□ 1.31
COL3A1P02461 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL3A1P02461 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC23.23■■□□□ 1.31
COL3A1P02461 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC23.23■■□□□ 1.31
COL3A1P02461 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
COL3A1P02461 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
COL3A1P02461 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL3A1P02461 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
COL3A1P02461 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC23.23■■□□□ 1.31
COL3A1P02461 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
COL3A1P02461 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
COL3A1P02461 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
COL3A1P02461 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
COL3A1P02461 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC23.23■■□□□ 1.31
COL3A1P02461 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC23.23■■□□□ 1.31
COL3A1P02461 COX5A-202ENST00000562233 441 ntTSL 3 BASIC23.23■■□□□ 1.31
COL3A1P02461 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
COL3A1P02461 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
COL3A1P02461 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC23.22■■□□□ 1.31
COL3A1P02461 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
COL3A1P02461 GPR89P-201ENST00000407924 1495 ntBASIC23.22■■□□□ 1.31
COL3A1P02461 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
COL3A1P02461 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC23.22■■□□□ 1.31
COL3A1P02461 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL3A1P02461 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC23.22■■□□□ 1.31
COL3A1P02461 MIR574-201ENST00000385209 96 ntBASIC23.22■■□□□ 1.31
COL3A1P02461 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL3A1P02461 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC23.22■■□□□ 1.31
COL3A1P02461 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC23.22■■□□□ 1.31
COL3A1P02461 UNC93B6-202ENST00000528242 690 ntBASIC23.22■■□□□ 1.31
COL3A1P02461 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC23.22■■□□□ 1.31
COL3A1P02461 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
COL3A1P02461 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC23.22■■□□□ 1.31
COL3A1P02461 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC23.22■■□□□ 1.31
COL3A1P02461 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL3A1P02461 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
COL3A1P02461 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms