Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PDGFBP01127 AC109462.3-201ENST00000573934 613 ntBASIC17.68■□□□□ 0.42
PDGFBP01127 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.68■□□□□ 0.42
PDGFBP01127 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.68■□□□□ 0.42
PDGFBP01127 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
PDGFBP01127 ACTL9-202ENST00000612068 1252 ntBASIC17.68■□□□□ 0.42
PDGFBP01127 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
PDGFBP01127 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.68■□□□□ 0.42
PDGFBP01127 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.68■□□□□ 0.42
PDGFBP01127 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
PDGFBP01127 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PDGFBP01127 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
PDGFBP01127 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
PDGFBP01127 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PDGFBP01127 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDGFBP01127 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDGFBP01127 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDGFBP01127 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.67■□□□□ 0.42
PDGFBP01127 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.67■□□□□ 0.42
PDGFBP01127 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDGFBP01127 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.67■□□□□ 0.42
PDGFBP01127 AC018445.3-201ENST00000624177 1945 ntBASIC17.67■□□□□ 0.42
PDGFBP01127 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.67■□□□□ 0.42
PDGFBP01127 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
PDGFBP01127 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDGFBP01127 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
PDGFBP01127 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.67■□□□□ 0.42
PDGFBP01127 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.67■□□□□ 0.42
PDGFBP01127 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.67■□□□□ 0.42
PDGFBP01127 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.67■□□□□ 0.42
PDGFBP01127 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.67■□□□□ 0.42
PDGFBP01127 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.67■□□□□ 0.42
PDGFBP01127 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
PDGFBP01127 AP001059.3-201ENST00000619053 235 ntBASIC17.67■□□□□ 0.42
PDGFBP01127 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDGFBP01127 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.67■□□□□ 0.42
PDGFBP01127 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.67■□□□□ 0.42
PDGFBP01127 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDGFBP01127 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC17.67■□□□□ 0.42
PDGFBP01127 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDGFBP01127 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDGFBP01127 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.67■□□□□ 0.42
PDGFBP01127 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDGFBP01127 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDGFBP01127 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDGFBP01127 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.66■□□□□ 0.42
PDGFBP01127 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.66■□□□□ 0.42
PDGFBP01127 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC17.66■□□□□ 0.42
PDGFBP01127 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDGFBP01127 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.66■□□□□ 0.42
PDGFBP01127 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PDGFBP01127 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
PDGFBP01127 AC002056.1-201ENST00000395613 760 ntBASIC17.66■□□□□ 0.42
PDGFBP01127 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.66■□□□□ 0.42
PDGFBP01127 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.66■□□□□ 0.42
PDGFBP01127 STK19B-204ENST00000512515 211 ntBASIC17.66■□□□□ 0.42
PDGFBP01127 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.66■□□□□ 0.42
PDGFBP01127 CR383656.12-201ENST00000549567 513 ntBASIC17.66■□□□□ 0.42
PDGFBP01127 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.66■□□□□ 0.42
PDGFBP01127 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDGFBP01127 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.66■□□□□ 0.42
PDGFBP01127 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.66■□□□□ 0.42
PDGFBP01127 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.66■□□□□ 0.42
PDGFBP01127 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.66■□□□□ 0.42
PDGFBP01127 AC025048.6-201ENST00000634326 1161 ntBASIC17.66■□□□□ 0.42
PDGFBP01127 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.66■□□□□ 0.42
PDGFBP01127 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PDGFBP01127 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDGFBP01127 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDGFBP01127 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.66■□□□□ 0.42
PDGFBP01127 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.66■□□□□ 0.42
PDGFBP01127 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDGFBP01127 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PDGFBP01127 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PDGFBP01127 ESPNP-201ENST00000270691 2015 ntBASIC17.65■□□□□ 0.42
PDGFBP01127 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.65■□□□□ 0.42
PDGFBP01127 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDGFBP01127 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDGFBP01127 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PDGFBP01127 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.65■□□□□ 0.42
PDGFBP01127 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.65■□□□□ 0.42
PDGFBP01127 NME2P1-201ENST00000426182 414 ntBASIC17.65■□□□□ 0.42
PDGFBP01127 RBPMS2P1-201ENST00000437762 623 ntBASIC17.65■□□□□ 0.42
PDGFBP01127 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.65■□□□□ 0.42
PDGFBP01127 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.65■□□□□ 0.42
PDGFBP01127 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.65■□□□□ 0.42
PDGFBP01127 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
PDGFBP01127 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PDGFBP01127 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
PDGFBP01127 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.65■□□□□ 0.42
PDGFBP01127 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.65■□□□□ 0.42
PDGFBP01127 AL596325.1-201ENST00000563991 1082 ntBASIC17.65■□□□□ 0.42
PDGFBP01127 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PDGFBP01127 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDGFBP01127 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDGFBP01127 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
PDGFBP01127 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PDGFBP01127 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PDGFBP01127 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
PDGFBP01127 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms