Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC20.47■□□□□ 0.87
CTDNEP1O95476 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CTDNEP1O95476 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTDNEP1O95476 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CTDNEP1O95476 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.47■□□□□ 0.87
CTDNEP1O95476 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CTDNEP1O95476 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTDNEP1O95476 SLC25A1P3-201ENST00000395415 828 ntBASIC20.47■□□□□ 0.87
CTDNEP1O95476 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CTDNEP1O95476 DRAXINP1-201ENST00000437611 948 ntBASIC20.47■□□□□ 0.87
CTDNEP1O95476 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC20.47■□□□□ 0.87
CTDNEP1O95476 TK1-204ENST00000590430 683 ntTSL 3 BASIC20.47■□□□□ 0.87
CTDNEP1O95476 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CTDNEP1O95476 NPAP1P7-201ENST00000613027 823 ntBASIC20.47■□□□□ 0.87
CTDNEP1O95476 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC20.47■□□□□ 0.87
CTDNEP1O95476 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTDNEP1O95476 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CTDNEP1O95476 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC20.47■□□□□ 0.87
CTDNEP1O95476 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTDNEP1O95476 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTDNEP1O95476 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
CTDNEP1O95476 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CTDNEP1O95476 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTDNEP1O95476 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC20.47■□□□□ 0.87
CTDNEP1O95476 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
CTDNEP1O95476 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.46■□□□□ 0.87
CTDNEP1O95476 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC20.46■□□□□ 0.87
CTDNEP1O95476 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CTDNEP1O95476 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.46■□□□□ 0.87
CTDNEP1O95476 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
CTDNEP1O95476 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC20.46■□□□□ 0.87
CTDNEP1O95476 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC20.46■□□□□ 0.87
CTDNEP1O95476 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.46■□□□□ 0.87
CTDNEP1O95476 AC109462.3-201ENST00000573934 613 ntBASIC20.46■□□□□ 0.87
CTDNEP1O95476 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.46■□□□□ 0.87
CTDNEP1O95476 AP002414.4-201ENST00000589764 1148 ntBASIC20.46■□□□□ 0.87
CTDNEP1O95476 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CTDNEP1O95476 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 AP000550.4-202ENST00000639755 178 ntBASIC20.46■□□□□ 0.87
CTDNEP1O95476 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.46■□□□□ 0.87
CTDNEP1O95476 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 KRT18P1-202ENST00000452408 1331 ntBASIC20.46■□□□□ 0.87
CTDNEP1O95476 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CTDNEP1O95476 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CTDNEP1O95476 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.87
CTDNEP1O95476 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDNEP1O95476 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC20.45■□□□□ 0.86
CTDNEP1O95476 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CTDNEP1O95476 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDNEP1O95476 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDNEP1O95476 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDNEP1O95476 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDNEP1O95476 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CTDNEP1O95476 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDNEP1O95476 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.45■□□□□ 0.86
CTDNEP1O95476 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.45■□□□□ 0.86
CTDNEP1O95476 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC20.45■□□□□ 0.86
CTDNEP1O95476 AC122714.2-201ENST00000502787 707 ntBASIC20.45■□□□□ 0.86
CTDNEP1O95476 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CTDNEP1O95476 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.45■□□□□ 0.86
CTDNEP1O95476 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC20.45■□□□□ 0.86
CTDNEP1O95476 DBP-204ENST00000599385 709 ntTSL 3 BASIC20.45■□□□□ 0.86
CTDNEP1O95476 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC20.45■□□□□ 0.86
CTDNEP1O95476 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDNEP1O95476 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.45■□□□□ 0.86
CTDNEP1O95476 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CTDNEP1O95476 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDNEP1O95476 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDNEP1O95476 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CTDNEP1O95476 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CTDNEP1O95476 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC20.45■□□□□ 0.86
CTDNEP1O95476 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
CTDNEP1O95476 KRT8P10-201ENST00000450021 1447 ntBASIC20.44■□□□□ 0.86
CTDNEP1O95476 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTDNEP1O95476 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CTDNEP1O95476 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.44■□□□□ 0.86
CTDNEP1O95476 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC20.44■□□□□ 0.86
CTDNEP1O95476 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.44■□□□□ 0.86
CTDNEP1O95476 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTDNEP1O95476 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTDNEP1O95476 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms