Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 RNF151-202ENST00000569210 853 ntTSL 2 BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 AC018445.3-201ENST00000624177 1945 ntBASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CTDP1Q9Y5B0 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.45■□□□□ 0.87
CTDP1Q9Y5B0 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
CTDP1Q9Y5B0 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 COX5BP2-201ENST00000392354 334 ntBASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 POLD2P1-201ENST00000511220 997 ntBASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 RPL18-209ENST00000550645 463 ntTSL 5 BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 RPL18-214ENST00000552588 559 ntTSL 3 BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 AC105339.3-201ENST00000560043 636 ntBASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 AL671883.3-201ENST00000603274 991 ntBASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 AC008735.5-201ENST00000623544 497 ntBASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 AL022326.1-202ENST00000641533 845 ntBASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CTDP1Q9Y5B0 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 CSF3-203ENST00000394148 622 ntTSL 3 BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 RPP21-221ENST00000428040 594 ntTSL 2 BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 PIN1-206ENST00000587625 878 ntTSL 2 BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 AC073592.5-201ENST00000624854 528 ntBASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 AC079776.2-201ENST00000641154 1609 ntBASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTDP1Q9Y5B0 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CTDP1Q9Y5B0 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
CTDP1Q9Y5B0 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms