Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.92■□□□□ 0.62
SIX4Q9UIU6 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 VPS51-217ENST00000639871 243 ntTSL 5 BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.92■□□□□ 0.62
SIX4Q9UIU6 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SIX4Q9UIU6 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC18.91■□□□□ 0.62
SIX4Q9UIU6 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX4Q9UIU6 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
SIX4Q9UIU6 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
SIX4Q9UIU6 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX4Q9UIU6 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX4Q9UIU6 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.91■□□□□ 0.62
SIX4Q9UIU6 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX4Q9UIU6 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.91■□□□□ 0.62
SIX4Q9UIU6 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SIX4Q9UIU6 LINC01451-201ENST00000623792 534 ntBASIC18.91■□□□□ 0.62
SIX4Q9UIU6 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.91■□□□□ 0.62
SIX4Q9UIU6 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
SIX4Q9UIU6 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SIX4Q9UIU6 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.91■□□□□ 0.62
SIX4Q9UIU6 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX4Q9UIU6 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SIX4Q9UIU6 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.91■□□□□ 0.62
SIX4Q9UIU6 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SIX4Q9UIU6 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 AP002469.2-201ENST00000531724 424 ntBASIC18.9■□□□□ 0.62
SIX4Q9UIU6 SART3-203ENST00000546611 1184 ntBASIC18.9■□□□□ 0.62
SIX4Q9UIU6 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 STK25P1-201ENST00000585406 838 ntBASIC18.9■□□□□ 0.62
SIX4Q9UIU6 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 AC073592.4-201ENST00000623827 446 ntBASIC18.9■□□□□ 0.62
SIX4Q9UIU6 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.9■□□□□ 0.62
SIX4Q9UIU6 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
SIX4Q9UIU6 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SIX4Q9UIU6 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.62
SIX4Q9UIU6 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
SIX4Q9UIU6 AC079776.2-201ENST00000641154 1609 ntBASIC18.89■□□□□ 0.62
SIX4Q9UIU6 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 GNAS-203ENST00000306120 1878 ntBASIC18.89■□□□□ 0.61
SIX4Q9UIU6 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 SPDYE21P-201ENST00000413323 827 ntBASIC18.89■□□□□ 0.61
SIX4Q9UIU6 AC009078.2-202ENST00000463353 338 ntBASIC18.89■□□□□ 0.61
SIX4Q9UIU6 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 AL160237.2-201ENST00000556165 472 ntBASIC18.89■□□□□ 0.61
SIX4Q9UIU6 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX4Q9UIU6 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms