Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 AC006116.8-202ENST00000587620 1550 ntBASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 HTR7P1-202ENST00000624664 4411 ntBASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CUEDC1Q9NWM3 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 VENTXP7-201ENST00000475503 772 ntBASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CUEDC1Q9NWM3 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.34
CUEDC1Q9NWM3 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
CUEDC1Q9NWM3 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 BCL2-203ENST00000589955 5011 ntBASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 AL022342.1-201ENST00000400363 863 ntBASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 AC074051.2-201ENST00000565115 352 ntBASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 Z69720.1-201ENST00000601483 472 ntBASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms