Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VCX3AQ9NNX9 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
VCX3AQ9NNX9 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.58■□□□□ 0.25
VCX3AQ9NNX9 AL355312.1-201ENST00000407115 2176 ntBASIC16.58■□□□□ 0.25
VCX3AQ9NNX9 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
VCX3AQ9NNX9 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.58■□□□□ 0.25
VCX3AQ9NNX9 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VCX3AQ9NNX9 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VCX3AQ9NNX9 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.58■□□□□ 0.25
VCX3AQ9NNX9 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
VCX3AQ9NNX9 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.58■□□□□ 0.25
VCX3AQ9NNX9 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
VCX3AQ9NNX9 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
VCX3AQ9NNX9 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.58■□□□□ 0.25
VCX3AQ9NNX9 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 DBET-201ENST00000630918 3363 ntBASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
VCX3AQ9NNX9 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 AC133963.1-201ENST00000504166 1679 ntBASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 AC068338.2-201ENST00000563278 1430 ntBASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 AL160286.2-201ENST00000567150 934 ntBASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
VCX3AQ9NNX9 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 RPS2P52-201ENST00000469610 820 ntBASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 AC005829.2-201ENST00000571422 1056 ntBASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms