Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 AC139713.2-201ENST00000641328 2723 ntBASIC16.44■□□□□ 0.22
UBQLN3Q9H347 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 AC233702.3-201ENST00000578656 1387 ntBASIC16.44■□□□□ 0.22
UBQLN3Q9H347 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.44■□□□□ 0.22
UBQLN3Q9H347 AL845331.1-201ENST00000424978 1190 ntBASIC16.44■□□□□ 0.22
UBQLN3Q9H347 AC246785.2-201ENST00000432512 513 ntBASIC16.44■□□□□ 0.22
UBQLN3Q9H347 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 LINC00265-3P-201ENST00000447588 903 ntBASIC16.44■□□□□ 0.22
UBQLN3Q9H347 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 KRT126P-201ENST00000549467 1181 ntBASIC16.44■□□□□ 0.22
UBQLN3Q9H347 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 AL645608.8-201ENST00000606034 2086 ntBASIC16.44■□□□□ 0.22
UBQLN3Q9H347 LINC00167-201ENST00000530583 1419 ntBASIC16.44■□□□□ 0.22
UBQLN3Q9H347 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.44■□□□□ 0.22
UBQLN3Q9H347 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 AC012615.1-201ENST00000565797 1299 ntBASIC16.43■□□□□ 0.22
UBQLN3Q9H347 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UBQLN3Q9H347 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 LINC00602-201ENST00000629776 2065 ntBASIC16.42■□□□□ 0.22
UBQLN3Q9H347 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 SIRPAP1-201ENST00000448467 1770 ntBASIC16.42■□□□□ 0.22
UBQLN3Q9H347 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 TSPY12P-201ENST00000421279 868 ntBASIC16.42■□□□□ 0.22
UBQLN3Q9H347 NUS1P1-201ENST00000446295 882 ntBASIC16.42■□□□□ 0.22
UBQLN3Q9H347 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 AP000867.3-201ENST00000524675 377 ntBASIC16.42■□□□□ 0.22
UBQLN3Q9H347 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.42■□□□□ 0.22
UBQLN3Q9H347 AC012313.10-201ENST00000623509 926 ntBASIC16.42■□□□□ 0.22
UBQLN3Q9H347 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
UBQLN3Q9H347 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms