Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RNF38Q9H0F5 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RNF38Q9H0F5 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.33■□□□□ 0.52
RNF38Q9H0F5 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.33■□□□□ 0.52
RNF38Q9H0F5 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.33■□□□□ 0.52
RNF38Q9H0F5 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.33■□□□□ 0.52
RNF38Q9H0F5 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.33■□□□□ 0.52
RNF38Q9H0F5 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.33■□□□□ 0.52
RNF38Q9H0F5 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
RNF38Q9H0F5 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
RNF38Q9H0F5 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
RNF38Q9H0F5 BICD1-207ENST00000551848 1962 ntBASIC18.33■□□□□ 0.52
RNF38Q9H0F5 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RNF38Q9H0F5 FLJ13224-201ENST00000313737 1514 ntBASIC18.33■□□□□ 0.52
RNF38Q9H0F5 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.33■□□□□ 0.52
RNF38Q9H0F5 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RNF38Q9H0F5 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.33■□□□□ 0.52
RNF38Q9H0F5 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RNF38Q9H0F5 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RNF38Q9H0F5 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 AC109462.3-201ENST00000573934 613 ntBASIC18.32■□□□□ 0.52
RNF38Q9H0F5 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 KRT18P55-202ENST00000578578 1546 ntBASIC18.32■□□□□ 0.52
RNF38Q9H0F5 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 AP002414.3-201ENST00000589352 1468 ntBASIC18.32■□□□□ 0.52
RNF38Q9H0F5 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF38Q9H0F5 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 AC148477.5-201ENST00000625164 1645 ntBASIC18.31■□□□□ 0.52
RNF38Q9H0F5 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 AC138028.4-201ENST00000564984 1845 ntBASIC18.31■□□□□ 0.52
RNF38Q9H0F5 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 AC098831.1-202ENST00000438821 336 ntBASIC18.31■□□□□ 0.52
RNF38Q9H0F5 DDX43P3-201ENST00000441064 443 ntBASIC18.31■□□□□ 0.52
RNF38Q9H0F5 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 BX276092.7-203ENST00000637198 1536 ntBASIC18.31■□□□□ 0.52
RNF38Q9H0F5 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF38Q9H0F5 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF38Q9H0F5 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF38Q9H0F5 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF38Q9H0F5 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF38Q9H0F5 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
RNF38Q9H0F5 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF38Q9H0F5 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF38Q9H0F5 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms