Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM54Q9BYV2 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.54■□□□□ 0.4
TRIM54Q9BYV2 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.54■□□□□ 0.4
TRIM54Q9BYV2 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.54■□□□□ 0.4
TRIM54Q9BYV2 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.54■□□□□ 0.4
TRIM54Q9BYV2 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM54Q9BYV2 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.54■□□□□ 0.4
TRIM54Q9BYV2 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.54■□□□□ 0.4
TRIM54Q9BYV2 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM54Q9BYV2 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
TRIM54Q9BYV2 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM54Q9BYV2 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM54Q9BYV2 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
TRIM54Q9BYV2 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM54Q9BYV2 AL353692.3-201ENST00000407031 1396 ntBASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 AL671277.2-201ENST00000458060 996 ntBASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
TRIM54Q9BYV2 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 HYMAI.1-201ENST00000620949 238 ntBASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
TRIM54Q9BYV2 AL645608.8-201ENST00000606034 2086 ntBASIC17.52■□□□□ 0.39
TRIM54Q9BYV2 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRIM54Q9BYV2 AC006116.8-202ENST00000587620 1550 ntBASIC17.52■□□□□ 0.39
TRIM54Q9BYV2 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRIM54Q9BYV2 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
TRIM54Q9BYV2 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.52■□□□□ 0.39
TRIM54Q9BYV2 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRIM54Q9BYV2 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 KRT18P21-201ENST00000515767 1272 ntBASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM54Q9BYV2 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms