Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 HNRNPDP1-201ENST00000439535 754 ntBASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 AC139887.3-201ENST00000568585 713 ntBASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 PRKN-208ENST00000610470 531 ntTSL 2 BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 PRKN-209ENST00000612485 225 ntTSL 5 BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 MIR7706-201ENST00000613747 67 ntBASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 SART3-203ENST00000546611 1184 ntBASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 AC021087.4-201ENST00000563761 564 ntBASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 AL356309.3-201ENST00000624132 1934 ntBASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 AC243591.1-201ENST00000452967 1364 ntBASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRAIPQ9BWF2 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRAIPQ9BWF2 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
TRAIPQ9BWF2 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRAIPQ9BWF2 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRAIPQ9BWF2 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.7
TRAIPQ9BWF2 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRAIPQ9BWF2 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRAIPQ9BWF2 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 PMS2P1-201ENST00000431037 1228 ntBASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 CALM1-205ENST00000553542 877 ntTSL 5 BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 AF228730.7-201ENST00000641842 219 ntBASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 AC022898.2-201ENST00000616822 1312 ntBASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
TRAIPQ9BWF2 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms