Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 NARF-204ENST00000390006 1766 ntTSL 2 BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 AC022898.2-201ENST00000616822 1312 ntBASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 RCN1P2-201ENST00000398357 915 ntBASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SH3RF1Q7Z6J0 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 PMS2P2-201ENST00000425039 1128 ntBASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 AC027796.2-201ENST00000575326 344 ntBASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SH3RF1Q7Z6J0 AC104109.2-201ENST00000602919 1418 ntBASIC20.27■□□□□ 0.83
SH3RF1Q7Z6J0 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC20.27■□□□□ 0.83
SH3RF1Q7Z6J0 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC20.27■□□□□ 0.83
SH3RF1Q7Z6J0 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 KRT89P-201ENST00000620027 1478 ntBASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 CSF3-203ENST00000394148 622 ntTSL 3 BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 SCARNA2-201ENST00000458748 420 ntBASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 AC010327.4-202ENST00000591484 748 ntBASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 MTDHP3-201ENST00000594186 672 ntBASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SH3RF1Q7Z6J0 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 UPF3AP3-201ENST00000420996 769 ntBASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms