Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 MED29-202ENST00000594368 1471 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 PP12613-201ENST00000424958 2230 ntBASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 AC133963.1-201ENST00000504166 1679 ntBASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 AC104076.2-201ENST00000448912 469 ntBASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 GPR32P1-201ENST00000601788 811 ntBASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 AL353692.3-201ENST00000407031 1396 ntBASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC40Q4G0X9 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 AC112698.1-201ENST00000510299 916 ntBASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 AC099398.1-201ENST00000567919 2776 ntBASIC19.52■□□□□ 0.72
CCDC40Q4G0X9 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
CCDC40Q4G0X9 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CCDC40Q4G0X9 HARS-201ENST00000307633 1780 ntTSL 2 BASIC19.52■□□□□ 0.71
CCDC40Q4G0X9 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CCDC40Q4G0X9 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CCDC40Q4G0X9 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.71
CCDC40Q4G0X9 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
CCDC40Q4G0X9 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
CCDC40Q4G0X9 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 DDX43P3-201ENST00000441064 443 ntBASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms