Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 AC068472.1-201ENST00000474589 881 ntBASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 AP000867.3-201ENST00000524675 377 ntBASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 AL355312.1-201ENST00000407115 2176 ntBASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 MTCL1P1-201ENST00000446207 792 ntBASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 TOB2P1-201ENST00000469761 992 ntBASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 IGHV3-41-201ENST00000613121 348 ntBASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTCHD3Q3KNS1 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
PTCHD3Q3KNS1 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
PTCHD3Q3KNS1 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PTCHD3Q3KNS1 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
PTCHD3Q3KNS1 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.33■□□□□ 0.37
PTCHD3Q3KNS1 AC106820.2-201ENST00000563775 3264 ntBASIC17.33■□□□□ 0.37
PTCHD3Q3KNS1 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PTCHD3Q3KNS1 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
PTCHD3Q3KNS1 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD3Q3KNS1 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.33■□□□□ 0.36
PTCHD3Q3KNS1 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD3Q3KNS1 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD3Q3KNS1 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD3Q3KNS1 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD3Q3KNS1 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.33■□□□□ 0.36
PTCHD3Q3KNS1 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
PTCHD3Q3KNS1 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.33■□□□□ 0.36
PTCHD3Q3KNS1 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD3Q3KNS1 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD3Q3KNS1 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD3Q3KNS1 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.33■□□□□ 0.36
PTCHD3Q3KNS1 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD3Q3KNS1 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
PTCHD3Q3KNS1 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.33■□□□□ 0.36
PTCHD3Q3KNS1 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.33■□□□□ 0.36
PTCHD3Q3KNS1 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD3Q3KNS1 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
PTCHD3Q3KNS1 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms