Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 AL096865.1-201ENST00000606796 927 ntBASIC17.03■□□□□ 0.32
COL28A1Q2UY09 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 AP002414.3-201ENST00000589352 1468 ntBASIC17.03■□□□□ 0.32
COL28A1Q2UY09 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 MCCD1P2-201ENST00000423228 335 ntBASIC17.02■□□□□ 0.32
COL28A1Q2UY09 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 ALG1L5P-201ENST00000482043 771 ntBASIC17.02■□□□□ 0.32
COL28A1Q2UY09 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 AC025062.2-201ENST00000605477 670 ntBASIC17.02■□□□□ 0.32
COL28A1Q2UY09 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL28A1Q2UY09 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL28A1Q2UY09 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL28A1Q2UY09 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL28A1Q2UY09 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
COL28A1Q2UY09 AP005117.1-201ENST00000584346 1413 ntBASIC17.02■□□□□ 0.31
COL28A1Q2UY09 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL28A1Q2UY09 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
COL28A1Q2UY09 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL28A1Q2UY09 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.02■□□□□ 0.31
COL28A1Q2UY09 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
COL28A1Q2UY09 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.01■□□□□ 0.31
COL28A1Q2UY09 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL28A1Q2UY09 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17■□□□□ 0.31
COL28A1Q2UY09 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL28A1Q2UY09 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17■□□□□ 0.31
COL28A1Q2UY09 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL28A1Q2UY09 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL28A1Q2UY09 KRT89P-201ENST00000620027 1478 ntBASIC17■□□□□ 0.31
COL28A1Q2UY09 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms