Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RPL13AP23-201ENST00000480739 586 ntBASIC18.9■□□□□ 0.62
SOX4Q06945 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
SOX4Q06945 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.9■□□□□ 0.62
SOX4Q06945 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.9■□□□□ 0.62
SOX4Q06945 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.9■□□□□ 0.62
SOX4Q06945 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.9■□□□□ 0.62
SOX4Q06945 STK25P1-201ENST00000585406 838 ntBASIC18.9■□□□□ 0.62
SOX4Q06945 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.9■□□□□ 0.62
SOX4Q06945 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SOX4Q06945 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.9■□□□□ 0.62
SOX4Q06945 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.9■□□□□ 0.62
SOX4Q06945 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
SOX4Q06945 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
SOX4Q06945 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
SOX4Q06945 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.89■□□□□ 0.61
SOX4Q06945 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SOX4Q06945 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SOX4Q06945 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
SOX4Q06945 LAGE3P1-201ENST00000425356 484 ntBASIC18.89■□□□□ 0.61
SOX4Q06945 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.89■□□□□ 0.61
SOX4Q06945 AC106730.1-201ENST00000566722 1090 ntBASIC18.89■□□□□ 0.61
SOX4Q06945 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.89■□□□□ 0.61
SOX4Q06945 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
SOX4Q06945 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SOX4Q06945 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
SOX4Q06945 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SOX4Q06945 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SOX4Q06945 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.89■□□□□ 0.61
SOX4Q06945 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.89■□□□□ 0.61
SOX4Q06945 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SOX4Q06945 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SOX4Q06945 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SOX4Q06945 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
SOX4Q06945 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SOX4Q06945 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SOX4Q06945 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.88■□□□□ 0.61
SOX4Q06945 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX4Q06945 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SOX4Q06945 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX4Q06945 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX4Q06945 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
SOX4Q06945 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SOX4Q06945 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
SOX4Q06945 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX4Q06945 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.88■□□□□ 0.61
SOX4Q06945 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SOX4Q06945 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SOX4Q06945 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.88■□□□□ 0.61
SOX4Q06945 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.88■□□□□ 0.61
SOX4Q06945 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.88■□□□□ 0.61
SOX4Q06945 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.88■□□□□ 0.61
SOX4Q06945 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.88■□□□□ 0.61
SOX4Q06945 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX4Q06945 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SOX4Q06945 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.88■□□□□ 0.61
SOX4Q06945 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX4Q06945 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SOX4Q06945 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.88■□□□□ 0.61
SOX4Q06945 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX4Q06945 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX4Q06945 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX4Q06945 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SOX4Q06945 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SOX4Q06945 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX4Q06945 AC003669.1-201ENST00000334569 611 ntBASIC18.87■□□□□ 0.61
SOX4Q06945 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.87■□□□□ 0.61
SOX4Q06945 KRT18P27-201ENST00000427733 1299 ntBASIC18.87■□□□□ 0.61
SOX4Q06945 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.87■□□□□ 0.61
SOX4Q06945 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.87■□□□□ 0.61
SOX4Q06945 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.87■□□□□ 0.61
SOX4Q06945 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.87■□□□□ 0.61
SOX4Q06945 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.87■□□□□ 0.61
SOX4Q06945 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.87■□□□□ 0.61
SOX4Q06945 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
SOX4Q06945 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.87■□□□□ 0.61
SOX4Q06945 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.87■□□□□ 0.61
SOX4Q06945 AC105339.3-201ENST00000560043 636 ntBASIC18.87■□□□□ 0.61
SOX4Q06945 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SOX4Q06945 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX4Q06945 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SOX4Q06945 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.87■□□□□ 0.61
SOX4Q06945 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SOX4Q06945 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX4Q06945 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX4Q06945 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.87■□□□□ 0.61
SOX4Q06945 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
SOX4Q06945 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX4Q06945 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX4Q06945 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms