Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.48■□□□□ 0.39
LIMK1P53667 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.48■□□□□ 0.39
LIMK1P53667 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.48■□□□□ 0.39
LIMK1P53667 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.48■□□□□ 0.39
LIMK1P53667 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.48■□□□□ 0.39
LIMK1P53667 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.48■□□□□ 0.39
LIMK1P53667 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.48■□□□□ 0.39
LIMK1P53667 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.48■□□□□ 0.39
LIMK1P53667 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
LIMK1P53667 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.48■□□□□ 0.39
LIMK1P53667 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.48■□□□□ 0.39
LIMK1P53667 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
LIMK1P53667 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMK1P53667 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
LIMK1P53667 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMK1P53667 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMK1P53667 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMK1P53667 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
LIMK1P53667 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMK1P53667 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
LIMK1P53667 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
LIMK1P53667 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMK1P53667 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMK1P53667 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMK1P53667 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMK1P53667 AC018470.1-201ENST00000624790 3129 ntBASIC17.47■□□□□ 0.39
LIMK1P53667 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMK1P53667 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.47■□□□□ 0.39
LIMK1P53667 AP000344.2-201ENST00000512987 629 ntBASIC17.47■□□□□ 0.39
LIMK1P53667 AC190387.1-201ENST00000551683 408 ntBASIC17.47■□□□□ 0.39
LIMK1P53667 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.47■□□□□ 0.39
LIMK1P53667 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMK1P53667 AC093028.1-201ENST00000622998 982 ntBASIC17.47■□□□□ 0.39
LIMK1P53667 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.47■□□□□ 0.39
LIMK1P53667 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMK1P53667 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMK1P53667 AC009102.3-201ENST00000623118 1491 ntBASIC17.47■□□□□ 0.39
LIMK1P53667 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.47■□□□□ 0.39
LIMK1P53667 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
LIMK1P53667 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMK1P53667 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.47■□□□□ 0.39
LIMK1P53667 WIZP1-201ENST00000531444 2299 ntBASIC17.47■□□□□ 0.39
LIMK1P53667 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
LIMK1P53667 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
LIMK1P53667 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
LIMK1P53667 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
LIMK1P53667 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMK1P53667 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMK1P53667 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMK1P53667 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.47■□□□□ 0.39
LIMK1P53667 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.47■□□□□ 0.39
LIMK1P53667 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMK1P53667 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMK1P53667 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMK1P53667 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMK1P53667 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIMK1P53667 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
LIMK1P53667 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.46■□□□□ 0.39
LIMK1P53667 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.46■□□□□ 0.39
LIMK1P53667 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.46■□□□□ 0.39
LIMK1P53667 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMK1P53667 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMK1P53667 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMK1P53667 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMK1P53667 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
LIMK1P53667 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.46■□□□□ 0.39
LIMK1P53667 BX005266.1-201ENST00000473402 457 ntBASIC17.46■□□□□ 0.39
LIMK1P53667 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.46■□□□□ 0.39
LIMK1P53667 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.46■□□□□ 0.39
LIMK1P53667 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.46■□□□□ 0.39
LIMK1P53667 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.46■□□□□ 0.39
LIMK1P53667 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.46■□□□□ 0.39
LIMK1P53667 AC138761.1-201ENST00000584393 385 ntBASIC17.46■□□□□ 0.39
LIMK1P53667 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.46■□□□□ 0.39
LIMK1P53667 AL078644.1-201ENST00000609881 752 ntBASIC17.46■□□□□ 0.39
LIMK1P53667 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
LIMK1P53667 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
LIMK1P53667 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMK1P53667 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms