Protein–RNA interactions for Protein: P48230

TM4SF4, Transmembrane 4 L6 family member 4, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF4P48230 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
TM4SF4P48230 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
TM4SF4P48230 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TM4SF4P48230 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TM4SF4P48230 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
TM4SF4P48230 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TM4SF4P48230 AKAP8P1-201ENST00000434743 1349 ntBASIC20.05■□□□□ 0.8
TM4SF4P48230 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TM4SF4P48230 AC008677.1-201ENST00000519230 1561 ntBASIC20.05■□□□□ 0.8
TM4SF4P48230 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
TM4SF4P48230 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
TM4SF4P48230 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
TM4SF4P48230 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.05■□□□□ 0.8
TM4SF4P48230 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TM4SF4P48230 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TM4SF4P48230 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TM4SF4P48230 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC20.05■□□□□ 0.8
TM4SF4P48230 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC20.05■□□□□ 0.8
TM4SF4P48230 AL512638.1-201ENST00000457493 794 ntBASIC20.05■□□□□ 0.8
TM4SF4P48230 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC20.05■□□□□ 0.8
TM4SF4P48230 INO80E-210ENST00000567705 880 ntTSL 3 BASIC20.05■□□□□ 0.8
TM4SF4P48230 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC20.05■□□□□ 0.8
TM4SF4P48230 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TM4SF4P48230 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC20.05■□□□□ 0.8
TM4SF4P48230 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC20.05■□□□□ 0.8
TM4SF4P48230 SERF2-217ENST00000630046 862 ntTSL 5 BASIC20.05■□□□□ 0.8
TM4SF4P48230 AC025048.6-201ENST00000634326 1161 ntBASIC20.05■□□□□ 0.8
TM4SF4P48230 RAB34-224ENST00000636513 888 ntTSL 5 BASIC20.05■□□□□ 0.8
TM4SF4P48230 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC20.05■□□□□ 0.8
TM4SF4P48230 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.05■□□□□ 0.8
TM4SF4P48230 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TM4SF4P48230 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
TM4SF4P48230 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.05■□□□□ 0.8
TM4SF4P48230 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TM4SF4P48230 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC20.05■□□□□ 0.8
TM4SF4P48230 AC129492.6-201ENST00000611383 1305 ntBASIC20.04■□□□□ 0.8
TM4SF4P48230 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TM4SF4P48230 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
TM4SF4P48230 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TM4SF4P48230 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TM4SF4P48230 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TM4SF4P48230 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TM4SF4P48230 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.04■□□□□ 0.8
TM4SF4P48230 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TM4SF4P48230 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TM4SF4P48230 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC20.04■□□□□ 0.8
TM4SF4P48230 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TM4SF4P48230 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC20.04■□□□□ 0.8
TM4SF4P48230 AC097493.3-201ENST00000509725 367 ntBASIC20.04■□□□□ 0.8
TM4SF4P48230 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TM4SF4P48230 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TM4SF4P48230 AL596325.1-201ENST00000563991 1082 ntBASIC20.04■□□□□ 0.8
TM4SF4P48230 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
TM4SF4P48230 SPDYE22P-201ENST00000582158 798 ntBASIC20.04■□□□□ 0.8
TM4SF4P48230 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TM4SF4P48230 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TM4SF4P48230 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.04■□□□□ 0.8
TM4SF4P48230 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TM4SF4P48230 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TM4SF4P48230 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.04■□□□□ 0.8
TM4SF4P48230 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TM4SF4P48230 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
TM4SF4P48230 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TM4SF4P48230 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.03■□□□□ 0.8
TM4SF4P48230 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC20.03■□□□□ 0.8
TM4SF4P48230 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.03■□□□□ 0.8
TM4SF4P48230 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.03■□□□□ 0.8
TM4SF4P48230 BX276092.7-203ENST00000637198 1536 ntBASIC20.03■□□□□ 0.8
TM4SF4P48230 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TM4SF4P48230 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TM4SF4P48230 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TM4SF4P48230 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TM4SF4P48230 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC20.03■□□□□ 0.8
TM4SF4P48230 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TM4SF4P48230 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC20.03■□□□□ 0.8
TM4SF4P48230 IGHV3-42-201ENST00000520410 361 ntBASIC20.03■□□□□ 0.8
TM4SF4P48230 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC20.03■□□□□ 0.8
TM4SF4P48230 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TM4SF4P48230 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC20.03■□□□□ 0.8
TM4SF4P48230 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC20.03■□□□□ 0.8
TM4SF4P48230 AC026150.2-201ENST00000564693 1156 ntBASIC20.03■□□□□ 0.8
TM4SF4P48230 AL135744.1-201ENST00000565098 629 ntBASIC20.03■□□□□ 0.8
TM4SF4P48230 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TM4SF4P48230 AL645728.2-201ENST00000641974 660 ntBASIC20.03■□□□□ 0.8
TM4SF4P48230 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TM4SF4P48230 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TM4SF4P48230 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.03■□□□□ 0.8
TM4SF4P48230 CYP51A1P2-201ENST00000419457 1499 ntBASIC20.03■□□□□ 0.8
TM4SF4P48230 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TM4SF4P48230 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.03■□□□□ 0.8
TM4SF4P48230 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TM4SF4P48230 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.03■□□□□ 0.8
TM4SF4P48230 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
TM4SF4P48230 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
TM4SF4P48230 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TM4SF4P48230 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TM4SF4P48230 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TM4SF4P48230 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TM4SF4P48230 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.02■□□□□ 0.8
TM4SF4P48230 AC022494.1-201ENST00000466044 728 ntBASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms